PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000995.1_g00022.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 201aa MW: 22143 Da PI: 8.1337

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000995.1_g00022.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	95.7	4.9e-30	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +C++C++lr++C+++C+l++ + p++q++++ +v+k+FG++ ++++l+++ ++r+++++sl++eA+ r+ +Pv+Gavg+++ Itr_sc000995.1_g00022.1 2 SCNGCRILRKGCNENCILRESLqgittPQAQANATLFVAKFFGRAGLMSFLSSVTASQRPALFQSLLFEACGRTVNPVHGAVGLLW 87 6*********************************************************************************** PP DUF260 82 klqqqleqlkaelall 97 +++++l+q+++e++l+ Itr_sc000995.1_g00022.1 88 TGNWHLCQTAVETVLR 103 ********998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.362	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.9E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MSCNGCRILR KGCNENCILR ESLQGITTPQ AQANATLFVA KFFGRAGLMS FLSSVTASQR 60 PALFQSLLFE ACGRTVNPVH GAVGLLWTGN WHLCQTAVET VLRGGVLHAP SDFAGDSAEE 120 TDDAKLFNPH EASVRAVIDD LDLGLRMSSE GKVNRQTAMR RRSRRRGTPS EESEITTSES 180 SYAYRQNEQQ GNDVKLLRLF F

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019166456.1	1e-119	PREDICTED: LOB domain-containing protein 38-like
Swissprot	Q9SN23	1e-58	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A2G2Y2H3	5e-90	A0A2G2Y2H3_CAPAN; LOB domain-containing protein 39
TrEMBL	M1CF43	7e-90	M1CF43_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400066165	1e-90	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	1e-60	LOB domain-containing protein 38