PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001003.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 300aa    MW: 33462.3 Da    PI: 5.4295
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001003.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.75.7e-29140198259
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              dD+++WrKYGqK++kgs++prsYYrC+s+ gC ++k+vers ++p ++++tY+ eH h+
  Itr_sc001003.1_g00001.1 140 DDKWAWRKYGQKPIKGSPYPRSYYRCSSSkGCLARKQVERSCSEPGMFIVTYTAEHCHS 198
                              8**************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.3E-30127200IPR003657WRKY domain
PROSITE profilePS5081131.823134200IPR003657WRKY domain
SuperFamilySSF1182904.84E-26137200IPR003657WRKY domain
SMARTSM007743.9E-35139199IPR003657WRKY domain
PfamPF031062.7E-24140197IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MMMAQSVGGC RLEDGALQAV VHGSSTRDSA AAAGFGVFDS RGSPDEDFGV FEDVVGTEMT  60
RIWNSDELEE LYKPFYNPVV CASSPVCFPK EVNEQQAVDD YQKQPAAAPP ATAVYVPKYK  120
RRKSEHKRVV LQVPLEELSD DKWAWRKYGQ KPIKGSPYPR SYYRCSSSKG CLARKQVERS  180
CSEPGMFIVT YTAEHCHSQP TRRNSLAGTI RNKFPTPAAS KKPQHNYSSE DQDHPPVASF  240
MSPAFSSVVS PAMVKEEEKN EYDINNVKYD VEDDFFAGLD DLDGLISHFS SACDQSFLYS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-17128200274WRKY transcription factor 1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019168753.11e-169PREDICTED: probable WRKY transcription factor 29
TrEMBLA0A1S4B2E51e-76A0A1S4B2E5_TOBAC; probable WRKY transcription factor 29
TrEMBLA0A1U7V8121e-76A0A1U7V812_NICSY; probable WRKY transcription factor 29
STRINGXP_009764282.12e-77(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57812335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.11e-34WRKY family protein