PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001003.1_g00002.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WRKY

Protein Properties

Length: 187aa MW: 21100.1 Da PI: 9.7121

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001003.1_g00002.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	101.3	5.7e-32	108	166	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK+vk+s++prsYYrCt+++C+vkk+++r ++d ++v++tYeg Hnh+ Itr_sc001003.1_g00002.1 108 LDDGFKWRKYGQKSVKNSTHPRSYYRCTHHTCNVKKQIQRLSKDRSIVVTTYEGIHNHP 166 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.9E-32	95	166	IPR003657	WRKY domain
SuperFamily	SSF118290	6.93E-28	100	167	IPR003657	WRKY domain
PROSITE profile	PS50811	27.944	103	168	IPR003657	WRKY domain
SMART	SM00774	5.0E-36	108	167	IPR003657	WRKY domain
Pfam	PF03106	2.1E-25	109	166	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MEGDEPQMIS NANDLPPQLF SFPSTSLQAP PPSLLSPLLP PTMQSSAQLG PDIDWVGLLS 60 GCTMDQTQAQ VLSENGNKSK GKKLVQSGKK NNFPPRIAFH TRSSEDILDD GFKWRKYGQK 120 SVKNSTHPRS YYRCTHHTCN VKKQIQRLSK DRSIVVTTYE GIHNHPCEKL METLTPLLKQ 180 LHFLPRF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-23	96	165	2	71	WRKY transcription factor 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019169044.1	1e-118	PREDICTED: probable WRKY transcription factor 43
Swissprot	Q8VWQ4	9e-55	WRK56_ARATH; Probable WRKY transcription factor 56
TrEMBL	A0A068UUY2	9e-66	A0A068UUY2_COFCA; Uncharacterized protein
STRING	XP_006491470.1	8e-66	(Citrus sinensis)
STRING	XP_006444939.1	8e-66	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6374	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64000.1	2e-56	WRKY DNA-binding protein 56