PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001004.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 259aa    MW: 29154.8 Da    PI: 9.6693
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001004.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.23.1e-32182240159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  Itr_sc001004.1_g00003.1 182 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHVHS 240
                              59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-33167240IPR003657WRKY domain
SuperFamilySSF1182901.83E-28174241IPR003657WRKY domain
PROSITE profilePS5081129.356177242IPR003657WRKY domain
SMARTSM007749.8E-37182241IPR003657WRKY domain
PfamPF031064.3E-25183239IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MSSSSTTSQA MLNQILFQDV ASSSSSLFCV SSNNNNITGT GTALPFESLK TLITVPMPTS  60
LASLLPPLVE SSSPNSTSAF NQTQTQTLLQ QHQDLSPLFG PPHHHQLLSL HRSAPNLWAW  120
GEVNECMMRS KRSGLVVDDH RHHHHLGGLG VSAVKMKKMS KSRRKVREPR FSFKTMSDVD  180
VLDDGYKWRK YGQKVVKNTQ HPRSYYRCTQ DNCRVKKRVE RLAEDPRMVI TTYEGRHVHS  240
PSHDDDDSQA SSQANDLLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-27172239774Probable WRKY transcription factor 4
2lex_A8e-27172239774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019179501.11e-153PREDICTED: probable WRKY transcription factor 13 isoform X1
RefseqXP_019179502.11e-153PREDICTED: probable WRKY transcription factor 13 isoform X2
SwissprotQ9SVB79e-57WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A1J6IC428e-91A0A1J6IC42_NICAT; Putative wrky transcription factor 13
STRINGXP_009782635.12e-91(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA103762126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.11e-43WRKY DNA-binding protein 13