PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001009.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Dof
Protein Properties Length: 398aa    MW: 43892.9 Da    PI: 7.5361
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001009.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof127.15.2e-40107167262
                   zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                              +++alkcprC+st+tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknkk+s
  Itr_sc001009.1_g00004.1 107 HDQALKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVS 167
                              6899******************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-28101161IPR003851Zinc finger, Dof-type
PfamPF027011.8E-33108165IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.059111165IPR003851Zinc finger, Dof-type
PROSITE patternPS013610113149IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010067Biological Processprocambium histogenesis
GO:0010087Biological Processphloem or xylem histogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MGLTSLQVCM DSSVDWLQGA GLGLLGLYSA FTAFAQQFPH TTCWDRMLTT MQLNFLIYCF  60
ERPTLTTMPK VGTIHDEGGM DSSSSPSGVD ILTCSRPLIE RRLRPPHDQA LKCPRCESTH  120
TKFCYYNNYS LSQPRYFCKT CRRYWTKGGT LRNIPVGGGC RKNKKVSSSS NNSSSSSSSA  180
NKKSSNDHNQ FPHPPPPLYH HHQNLGQSSS STSSPGSAGI NPTDLHLSFP AEMQFSHHFT  240
NFHLAPHTGF LGIESPTPID FMEGKYDSGF VMGTTPPPSR NQDFLGNNNG DFGIMAQTTF  300
PTSISPQFGM PIDGNTVGPT LMLPYDHHHH HGDHHQFNNA MHHHNHQDVK PNPKLLSLEW  360
HDQGCSDAGK DSFGYLNGVG SWTGLMNGYG SSTTNPLV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00580DAPTransfer from AT5G62940Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019154226.11e-161PREDICTED: dof zinc finger protein DOF5.6
TrEMBLA0A2N9HGN61e-114A0A2N9HGN6_FAGSY; Uncharacterized protein
STRINGEOY207321e-103(Theobroma cacao)
STRINGcassava4.1_012138m1e-103(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48952240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62940.14e-39Dof family protein