PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001029.1_g00008.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Dof

Protein Properties

Length: 231aa MW: 25094.7 Da PI: 8.9974

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001029.1_g00008.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.1	1.1e-39	25	86	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rkn++sss Itr_sc001029.1_g00008.1 25 KEKALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNRRSSS 86 6899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.8E-33	27	83	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-23	28	77	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.199	29	83	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	31	67	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MDTAQWPQNA VETARVAEKK PRPEKEKALN CPRCNSTNTK FCYYNNYSLS QPRYFCKTCR 60 RYWTEGGSLR NVPVGGGSRK NRRSSSSSLS SSSSTSSKKL PDHSTPSPPC FPLNPNAGQD 120 LNLAYPPPNT SNHGILHHLN PFHIPIPVSD PSTTAVFSSG FMFPLHDVKP AALDGFVNHV 180 EDSTGAARVF FPNLEDLKSG FEQYRAQGET NNGYWNGTHG GSAGGGGGGG W

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019188993.1	1e-113	PREDICTED: dof zinc finger protein DOF4.6-like
TrEMBL	A0A2I4GFZ6	1e-60	A0A2I4GFZ6_JUGRE; dof zinc finger protein DOF4.6-like
STRING	VIT_16s0098g01420.t01	7e-61	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.1	8e-32	Dof family protein