PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001037.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 239aa    MW: 26629.9 Da    PI: 8.3127
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001037.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.7e-11173218655
                              HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +++Er RR ri  ++ +L++l+P+     +k  s a++L +Av++Ik Lq
  Itr_sc001037.1_g00004.1 173 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIKCLQ 218
                              689*********************7....688****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.967167217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-15170232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.32E-10171222No hitNo description
Gene3DG3DSA:4.10.280.104.3E-14172231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-12173223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-8173218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGLGSCGLGV PESRRGVSRL NSQLSFTRQE TLSQVAEENE DVVGGSNSNS MENGQRKSTH  60
SYATGSFGVG TSWRDQDHNH HHNHNHDQSI AFSHMGSWHE DKNQPVMFSI TPGKRAKNAN  120
GDIAGGLNAM ETQFGMPQVA LEMASMDRYM QIPEDSVPCK IRAKRGCATH PRSIAERERR  180
TRISGKLKKL QDLVPNMDKQ TSYADMLDLA VQHIKCLQDK VQELHKELEH CTCGCKKTK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019180013.11e-153PREDICTED: transcription factor bHLH128-like
SwissprotQ8H1022e-62BH128_ARATH; Transcription factor bHLH128
TrEMBLA0A1S4BJN93e-97A0A1S4BJN9_TOBAC; transcription factor bHLH128-like isoform X2
TrEMBLA0A1S4BJT43e-97A0A1S4BJT4_TOBAC; transcription factor bHLH128-like isoform X1
TrEMBLA0A1U7YHV34e-97A0A1U7YHV3_NICSY; transcription factor bHLH128-like isoform X2
TrEMBLA0A1U7YNX04e-97A0A1U7YNX0_NICSY; transcription factor bHLH128-like isoform X1
TrEMBLA0A2G2Y2503e-98A0A2G2Y250_CAPAN; Transcription factor
STRINGXP_009803686.16e-98(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64552328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.13e-65bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]