PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001042.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family AP2
Protein Properties Length: 482aa    MW: 52089.3 Da    PI: 8.5625
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001042.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.93.8e-11138194155
                      AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              s y+GV++++++gr++A+++d  +     ++ k  + g ++ +++Aa+a++ a++k++g
  Itr_sc001042.1_g00001.1 138 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEDKAARAYDLAALKYWG 194
                              57*******************5444.2455535555.7799999*************98 PP
2AP247.44.9e-15237288155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Itr_sc001042.1_g00001.1 237 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 288
                              57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.01E-18138204No hitNo description
PfamPF008471.0E-8138194IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-14138204IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.1E-12139203IPR001471AP2/ERF domain
PROSITE profilePS5103217.174139202IPR001471AP2/ERF domain
SMARTSM003807.7E-22139208IPR001471AP2/ERF domain
PRINTSPR003672.4E-6140151IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-18237298IPR016177DNA-binding domain
PfamPF008476.1E-10237288IPR001471AP2/ERF domain
CDDcd000182.63E-25237298No hitNo description
Gene3DG3DSA:3.30.730.103.7E-18238296IPR001471AP2/ERF domain
PROSITE profilePS5103219.045238296IPR001471AP2/ERF domain
SMARTSM003807.9E-34238302IPR001471AP2/ERF domain
PRINTSPR003672.4E-6278298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MDMDSSAQNW LAFSLSNPQT PPNPSQLSFF HSFNSNSNSA VVRGEENGGG GPKLEDFLGG  60
SVGSSAGGAG GACLIAGESA AVSEPESYDS ELKSIAASFL RGFTADQNDS QKPQQAVAAP  120
PPDPPAKKAP ETFGQRTSIY RGVTRHRWTG RYEAHLWDNS CRREGQSRKG RQGGYDKEDK  180
AARAYDLAAL KYWGPTTTTN FPVSNYKKEL EEMKHMTRQE FVASLRRRSS GFSRGASIYR  240
GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGLN AVTNFDISRY  300
DVKTIGNSNL PIGGLSNKPK TSSESDAKIS DDRDQTSASS SVSFTPLPPA PAFALPIKQD  360
SNDFWSMLGC HNNNNTKNPC PSAGVNFPGP PSSTSIQAQS TYIQAQSTPL YGMEIPSTSH  420
INQANHSFPG MNFHHHSNTA GLSSAPIPET RGGWGNIPSS LSTFQAAKSD LSAFQTPIFS  480
ME
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019182087.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-141AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A2R6P4C10.0A0A2R6P4C1_ACTCH; AP2-like ethylene-responsive transcription factor
STRINGXP_010265446.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22462457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-118AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]