PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001044.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 200aa    MW: 22420.1 Da    PI: 9.7539
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001044.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding491.4e-151764148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+W+++Ed++l+d+++++G g W+  ++  g+ R+ k+c++rw ++l
  Itr_sc001044.1_g00003.1 17 KGAWSKQEDQKLLDYIRKHGEGGWRDLPKAAGLLRCSKSCRLRWMNHL 64
                             79******************************99************97 PP
2Myb_DNA-binding39.81.1e-1270143147
                              TSSS-HHHHHHHHHHHHHTTTT............................-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg............................tWktIartmgkgRtlkqcksrwqky 47 
                              rg++  +E++l+++++++lG                              +W++Ia +++ gRt++++k++w+++
  Itr_sc001044.1_g00003.1  70 RGNFGDDEEDLIIKLHALLGDSgdsmtlrvsvgrgsmrydgfsnlsggfgRWSLIAGRLP-GRTDEEVKNYWNSH 143
                              899*****************88**************************************.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.6571268IPR017930Myb domain
SMARTSM007171.3E-111666IPR001005SANT/Myb domain
PfamPF002494.2E-141764IPR001005SANT/Myb domain
SuperFamilySSF466892.45E-191890IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-191871IPR009057Homeodomain-like
CDDcd001676.87E-101964No hitNo description
PROSITE profilePS512949.2969148IPR017930Myb domain
SMARTSM007174.2E-1169146IPR001005SANT/Myb domain
PfamPF002493.9E-1070143IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-2072148IPR009057Homeodomain-like
CDDcd001675.62E-7117144No hitNo description
SuperFamilySSF466896.66E-8118153IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MRKASCDHSH HHHEINKGAW SKQEDQKLLD YIRKHGEGGW RDLPKAAGLL RCSKSCRLRW  60
MNHLKQTAKR GNFGDDEEDL IIKLHALLGD SGDSMTLRVS VGRGSMRYDG FSNLSGGFGR  120
WSLIAGRLPG RTDEEVKNYW NSHIKKKLLD MGIDPNNHRL SCTHNTAAQT SGEKSRATSP  180
EKQRVESDGE VSDAGSSNVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-201414824128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019160100.11e-108PREDICTED: transcription factor MYB3-like
SwissprotQ9S9K92e-57MYB3_ARATH; Transcription factor MYB3
TrEMBLA0A4D6UZB55e-70A0A4D6UZB5_9ROSI; MYB transcription factor 14
STRINGPOPTR_0010s12420.17e-68(Populus trichocarpa)
STRINGXP_010044170.18e-68(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.19e-60myb domain protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  3. Wada T,Hayashi N,Tominaga-Wada R
    Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1089372
    [PMID:26339713]
  4. Wada T,Tominaga-Wada R
    CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression.
    Plant Sci., 2015. 241: p. 260-5
    [PMID:26706076]
  5. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  6. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  7. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]