PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001048.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 453aa    MW: 50337.4 Da    PI: 9.9176
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001048.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY31.34.1e-10270291223
                              --SS-EEEEEEE--TT-SS-EE CS
                     WRKY   2 dDgynWrKYGqKevkgsefprs 23 
                              +D+y+WrKYGqK++kgs++p s
  Itr_sc001048.1_g00002.1 270 QDEYCWRKYGQKPIKGSPHPSS 291
                              7******************976 PP
2WRKY543.4e-173513902159
                              -EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY  21 prsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                              +r+YY+C+s  gCp++k+ver+ edp+++++tYegeHnh+
  Itr_sc001048.1_g00002.1 351 ARGYYKCSSMrGCPARKHVERCLEDPSMLIVTYEGEHNHP 390
                              79*****9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.7E-18222267IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.807.9E-31257289IPR003657WRKY domain
PROSITE profilePS5081120.679264392IPR003657WRKY domain
SuperFamilySSF1182906.93E-7267291IPR003657WRKY domain
SMARTSM007741.4E-28269391IPR003657WRKY domain
PfamPF031061.0E-5270291IPR003657WRKY domain
PfamPF031063.0E-14351390IPR003657WRKY domain
SuperFamilySSF1182907.19E-14351391IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.9E-31352390IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MEEIEEANKA AVHSCHRIIS LLSQPHDENH YGKLMIESGD AVHKFKRVVS LLNSKLGHAR  60
VRKGNRTHTP LSPKFLLENP VTGNDDRPKA LHLLPINSLE ILNQERSSTV NSALTLGNPL  120
HGKSPIQLPH YTSMTNYRFP QQQQRYELQQ QQHRHGEMIC RQSSNSGISL NFDSTTCTPT  180
LSTTRSFISS LSVDGSVANM DGSAFHLIGS SCSGDQSTFQ RKKRCSGRGE DGSTKCGSSG  240
RCHCSKKRKH RVKRSIKVPA ISNKLADIPQ DEYCWRKYGQ KPIKGSPHPS SVIAPCLFSM  300
KIVFINSVLA SLDTQEQKPA ATTRGCALGK YGLMTLASKG PQGGTLCVGL ARGYYKCSSM  360
RGCPARKHVE RCLEDPSMLI VTYEGEHNHP RYRLFLHGIG KNEDAKCLFI YLLFCTIGHR  420
VCGNRYIVDH GAHSNVHPGP KRHRFDVSGR GRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019188708.10.0PREDICTED: probable WRKY transcription factor 21
TrEMBLA0A1S3Z7451e-124A0A1S3Z745_TOBAC; probable WRKY transcription factor 21
STRINGXP_009778997.11e-124(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32712350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.22e-59WRKY DNA-binding protein 39