PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001057.1_g00006.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

M-type_MADS

Protein Properties

Length: 231aa MW: 25627.5 Da PI: 10.7858

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001057.1_g00006.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	48	1.6e-15	11	49	3	41
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 i n+s+r++++ kR+ngilKK +EL +LC++++a++++ Itr_sc001057.1_g00006.1 11 IVNQSKRKTSYRKRKNGILKKLNELTILCGVDAAIVMYN 49 78***********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	17.058	1	50	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.1E-17	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.27E-19	2	94	IPR002100	Transcription factor, MADS-box
CDD	cd00266	1.66E-20	2	81	No hit	No description
PRINTS	PR00404	6.1E-7	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.4E-15	11	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.1E-7	23	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MTRRRLRLAY IVNQSKRKTS YRKRKNGILK KLNELTILCG VDAAIVMYNS FESGPVIWPS 60 AGEFLQRIAR LLNSPYAEQT RRMMSHESFV EQRLHNLSTK LLKVKKDNRE GQMNALMHKI 120 FSGERTIDSL SSIDLNDLGW VLNSNLAKIG KKAEEIMRHS STLASSTLAP AQTLTAFIPG 180 AHSFTTVSPS VVSLGTSNVV APADVLSRYQ GTGMQTGPTY GAPGPRYSQN L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	24	RRRLRLAYIVNQSKRKTSYRKRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019186570.1	1e-87	PREDICTED: agamous-like MADS-box protein AGL80

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1532	23	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31630.1	1e-29	AGAMOUS-like 86