PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001067.1_g00008.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NF-YA
Protein Properties Length: 366aa    MW: 40464.4 Da    PI: 8.3773
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001067.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA97.81.1e-30220274358
                CBFB_NFYA   3 plYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                              p+YVNaKQy++Il+RR+ Rakle+e+k+  k rkpylheSRh hAl+R+RgsgGrF
  Itr_sc001067.1_g00008.1 220 PIYVNAKQYRAILRRREIRAKLEAENKV-VKVRKPYLHESRHAHALKRARGSGGRF 274
                              9***************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.4E-34216277IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.693217277IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.6E-27220274IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.1E-22220242IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860222242IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.1E-22251274IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MLNFSFSKKE GDQTAAQSFT PMSITSSSLW NSTDQPENPL SESADTGQKS APQRGFCMKQ  60
TESQLQDQDN TSTLSTDQSH QTVAAMTPSN CHMPKVGPQP GFATLLSLLI SSDMSHSLET  120
QLGRLRSYAE IHERQMKDCS IKPSQPHLDE DCTIHQGQLD FSQSMACLSW TEPYLGRLVA  180
TYGPNGIIVV FLKFEQIYPQ MVGIVPARMP LPSECAESIP IYVNAKQYRA ILRRREIRAK  240
LEAENKVVKV RKPYLHESRH AHALKRARGS GGRFLNKSEL QQLKSAASPT HGKNISNQKG  300
GGDISGSQLQ HSESGSWGTS TPSGSDVTSI FSGDGIFQQP EFRVSSSPYH MGVSMHEAEN  360
FVRRRT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-19220279463NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019154169.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1
RefseqXP_019154170.10.0PREDICTED: nuclear transcription factor Y subunit A-3-like isoform X1
TrEMBLA0A1U8F4C11e-106A0A1U8F4C1_CAPAN; nuclear transcription factor Y subunit A-3-like
STRINGXP_009608945.11e-107(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48002027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.14e-41nuclear factor Y, subunit A3