PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001072.1_g00007.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 235aa    MW: 26252.1 Da    PI: 9.3089
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001072.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF725.1e-231663249
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                             +ie k   qvtfskRr g++KKA+EL++LC++eva+i+fs+ gk++ +
  Itr_sc001072.1_g00007.1 16 KIEIKNHLQVTFSKRRSGLFKKASELCILCGVEVAIIVFSPAGKVFSF 63
                             67888889*************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554555.23E-28777IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.848767IPR002100Transcription factor, MADS-box
SMARTSM004324.7E-34766IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-19929IPR002100Transcription factor, MADS-box
PfamPF003198.6E-251663IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-192944IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-194465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MAKRPSMGRQ KIKIEKIEIK NHLQVTFSKR RSGLFKKASE LCILCGVEVA IIVFSPAGKV  60
FSFGHPNVDP IIDRFLVPRS HHHAAVSGGA AANATVHLVE AHRSAAVREM NLQLTQMTAE  120
TEIERKRGEA LDEMRKERRR RCWWEAPVSE LRLPELEQLR DAMDELKKNV VAQAESIMAE  180
AVNTSTFLAM NGTAAPAAGI FDPSEAKPPR IMGSNTHNHH HHHALHDFGY DLAFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124140RKRGEALDEMRKERRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019170880.11e-134PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A1U7UZ264e-95A0A1U7UZ26_NICSY; agamous-like MADS-box protein AGL62
STRINGXP_009761267.16e-96(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20424223
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-47AGAMOUS-like 61