PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001114.1_g00014.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 693aa    MW: 75839 Da    PI: 6.4276
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001114.1_g00014.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.33e-09274294526
                              --SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                              +C++f++ GtC++Gd+C +aHg
  Itr_sc001114.1_g00014.1 274 PCPDFRK-GTCQRGDSCEYAHG 294
                              8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484037.0E-1529180IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.9E-1629178IPR020683Ankyrin repeat-containing domain
PfamPF127961.3E-757141IPR020683Ankyrin repeat-containing domain
CDDcd002041.93E-1274178No hitNo description
PROSITE profilePS5029714.5375181IPR020683Ankyrin repeat-containing domain
SMARTSM002480.1775105IPR002110Ankyrin repeat
PROSITE profilePS5008811.381110145IPR002110Ankyrin repeat
SMARTSM002480.067110142IPR002110Ankyrin repeat
SMARTSM003567.6E-5269295IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-4274296IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-7274294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.173274296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-4302332IPR000571Zinc finger, CCCH-type
SMARTSM0035614304327IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MCSGSRRKEG VDDLGMEGEA QKQEGFMSGF SVLLEFSAAD DLDGFRKAVE EEGCDVNELG  60
LWYGRRIGSK KMGNEERTPL LIASYFGSKR VLSYILEKGC VDVNQACGSD GATALHCAVD  120
GGSAAMPEVV KLLLDASADA GLVDANGKRA ADLIAPGVFG HRRKIVEHLL KGKSDVEETG  180
GLIDWDTFDQ IEEQKVLNST VSKDGSEKKE YPVDPSLPDI KNGIYGTDEF RMYTFKVKPC  240
SRAYSHDWTE CPFVHPGENA RRRDPRKFHY TCVPCPDFRK GTCQRGDSCE YAHGIFECWL  300
HPAQYRTRMC KDESSCNRRV CFFAHRPEEL RPLYASTGSA VPSPRSYSLG ASPLDIASVS  360
PLALGSPSMM IAPTSTPPLT PSGPSSPRAR SLWPNNQLNL ATPTLQLPGS RLKTSLHARD  420
SDLDSGLLGL DRRQEQLMDE ISVLSSPSSQ RKSFSTAGTF TAPSGDLNGE MSRHPGLKPA  480
NFDDIFETLD PNILAKLQGL SLDAETTHLQ SPKGMHLRQN FLSSYPSHHS SSPVRTPSFQ  540
RDPSSAALNA RSAAFAKRSQ SFIDRSAPCH HHHGMISSPM SPATTMPPTL SGWGSPDGKL  600
DWGMQKDELS KLRKSASFGI RSSGTTYATT GTPFPTPADE PDVSWVQSLV RDTPAVSSRQ  660
FNSEDPQYCQ GSPEMHPAWG DQQIYLEQEQ IMA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019178445.10.0PREDICTED: zinc finger CCCH domain-containing protein 66-like isoform X1
RefseqXP_019178446.10.0PREDICTED: zinc finger CCCH domain-containing protein 66-like isoform X1
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A067LPM40.0A0A067LPM4_JATCU; Uncharacterized protein
STRINGXP_009795434.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25582245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein