PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001115.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 195aa    MW: 21859.2 Da    PI: 8.2223
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001115.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.11.7e-192173456
                             -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                             + ++t++q++ Le+ F +n++++ e++ +LA+ lg++ rqV +W+qNrRa++k
  Itr_sc001115.1_g00003.1 21 KKRLTQDQVKLLEASFDSNKKLDPERKFQLARDLGVPPRQVAIWYQNRRARWK 73
                             5679************************************************9 PP
2HD-ZIP_I/II112.13.5e-3620111293
              HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                              +k+rl+++qvklLE sF++++kL+perK +lar+Lg+ prqva+W+qnrRAR+k++ lE dy+aL+ ++++  +e+++Le+e+ +L
  Itr_sc001115.1_g00003.1  20 NKKRLTQDQVKLLEASFDSNKKLDPERKFQLARDLGVPPRQVAIWYQNRRARWKSQSLELDYSALQVKLESALAEKRHLEREMGKL 105
                              79************************************************************************************ PP

              HD-ZIP_I/II  88 reelke 93 
                              reelk+
  Itr_sc001115.1_g00003.1 106 REELKR 111
                              ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.2611575IPR001356Homeobox domain
SMARTSM003893.4E-161879IPR001356Homeobox domain
CDDcd000866.15E-152176No hitNo description
SuperFamilySSF466896.94E-182183IPR009057Homeodomain-like
PfamPF000467.3E-172173IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.5E-202282IPR009057Homeodomain-like
PRINTSPR000319.0E-54655IPR000047Helix-turn-helix motif
PROSITE patternPS0002705073IPR017970Homeobox, conserved site
PRINTSPR000319.0E-55571IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009646Biological Processresponse to absence of light
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MNFLNSQTKQ KTHSSSLNHN KKRLTQDQVK LLEASFDSNK KLDPERKFQL ARDLGVPPRQ  60
VAIWYQNRRA RWKSQSLELD YSALQVKLES ALAEKRHLER EMGKLREELK RAEERVLVVG  120
GSSSQGQGGG ATLARVSSFS PPNYNSSCCD EGMSSSFHDE EGLQFEELYA SLVGAEDGSN  180
TNSGSSWANG KDFWG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019153922.11e-116PREDICTED: homeobox-leucine zipper protein ATHB-52-like
TrEMBLA0A1S3YJP86e-63A0A1S3YJP8_TOBAC; homeobox-leucine zipper protein ATHB-52-like
STRINGXP_009608121.11e-63(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27152453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.11e-31homeobox protein 52