PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001120.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 189aa    MW: 21150 Da    PI: 9.3456
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001120.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.51.2e-32110168159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ vv++tYeg H h+
  Itr_sc001120.1_g00002.1 110 LDDGYRWRKYGQKAVKNNRFPRSYYRCTHQGCNVKKQVQRLSKDEGVVVTTYEGVHSHP 168
                              59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-3495168IPR003657WRKY domain
SuperFamilySSF1182901.31E-29102169IPR003657WRKY domain
PROSITE profilePS5081130.033105170IPR003657WRKY domain
SMARTSM007741.3E-38110169IPR003657WRKY domain
PfamPF031062.2E-26111168IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MDAYPSMFRC SSPSQPYLSL MNMMNNNNGG MESGFLGMKM SAGDVEVPCS EEMKSESICT  60
ATATTENNNG LMEIGAAKSP SSSSAGKKKG EKKMKKARFA FQTRSQVDIL DDGYRWRKYG  120
QKAVKNNRFP RSYYRCTHQG CNVKKQVQRL SKDEGVVVTT YEGVHSHPIE KSTDNFENIL  180
SQMQIYAAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-28100169776Probable WRKY transcription factor 4
2lex_A5e-28100169776Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019180912.11e-104PREDICTED: probable WRKY transcription factor 45 isoform X1
TrEMBLA0A1S3Y3034e-71A0A1S3Y303_TOBAC; probable WRKY transcription factor 75
STRINGXP_009615508.16e-72(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22042461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.13e-58WRKY DNA-binding protein 75