PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001121.1_g00005.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TCP

Protein Properties

Length: 131aa MW: 14703 Da PI: 9.7693

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001121.1_g00005.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	71	3.8e-22	10	69	3	62
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikel 62 g+ ++s++h kv gRdRR+Rls++ca r+F L + LG+ ++++t+eWLl qa p i Itr_sc001121.1_g00005.1 10 GRVEKSSDRHKKVFGRDRRIRLSLTCADRVFYLMKTLGHRTAGQTVEWLLSQAMPPINTV 69 566799*************************************************99865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.8E-21	15	73	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	18.81	15	69	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence Send to blast
MVASNRSSSG RVEKSSDRHK KVFGRDRRIR LSLTCADRVF YLMKTLGHRT AGQTVEWLLS 60 QAMPPINTVI SGNVAQPLPV RVITPKEEPT MNPIQGLVKS ESDFLCGTEL EYSPMELAWI 120 MFQSPVVNQL V

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA15672	5	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08330.1	1e-17	TCP family protein