PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001123.1_g00004.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 218aa    MW: 24675.5 Da    PI: 8.0922
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001123.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.33.7e-29132190159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDgy+WrKYG+K+vk++ +pr+YY+C+s gC+vkkkver+++d k++++tYeg Hnhe
  Itr_sc001123.1_g00004.1 132 LDDGYKWRKYGKKKVKSNSHPRNYYKCSSGGCKVKKKVERDQDDAKYLITTYEGVHNHE 190
                              59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-30118191IPR003657WRKY domain
SuperFamilySSF1182902.75E-26124190IPR003657WRKY domain
PROSITE profilePS5081128.644127192IPR003657WRKY domain
SMARTSM007742.3E-32132191IPR003657WRKY domain
PfamPF031063.2E-23133190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MSAPTFLEPN PNYLNYSTAP FSSNIIPDYD YSCYQDLDFF CADNHHLFSD DFTSSNDNNT  60
FGYPSSDLPQ TPLVLPEKSN NSTTGSSSCS SDGMPTSTNY MPVKCKRETM KGPKMKEKRA  120
IAFRTRTDLE VLDDGYKWRK YGKKKVKSNS HPRNYYKCSS GGCKVKKKVE RDQDDAKYLI  180
TTYEGVHNHE NLYVIYYQGM PATLTSNGLS LPAASQPY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-23121190372WRKY transcription factor 1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019175002.11e-125PREDICTED: probable WRKY transcription factor 51 isoform X2
TrEMBLA0A1J6L0Y95e-46A0A1J6L0Y9_NICAT; Putative wrky transcription factor 51
STRINGXP_010243312.19e-43(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21242462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.13e-17WRKY DNA-binding protein 51