PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001141.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LBD

Protein Properties

Length: 102aa MW: 11586.4 Da PI: 5.6741

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001141.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	94.8	9.4e-30	3	89	15	101
DUF260 15 dCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 C++ pyfp ++p++fa+vhk+FGa+n k+lk+++e +r d+++sl+yeA++r++dPvyG+vg+++ lqq++ + +++la+++++ Itr_sc001141.1_g00001.1 3 FCIFLPYFPPNDPQRFAVVHKIFGANNAGKMLKQVEEYKRGDVAESLYYEAQCRVEDPVYGCVGIVTLLQQEMYSFESQLAKIEAQ 88 5********************************************************************************99887 PP DUF260 101 l 101 + Itr_sc001141.1_g00001.1 89 I 89 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.607	1	89	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.2E-28	4	86	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 102 aa Download sequence Send to blast
MHFCIFLPYF PPNDPQRFAV VHKIFGANNA GKMLKQVEEY KRGDVAESLY YEAQCRVEDP 60 VYGCVGIVTL LQQEMYSFES QLAKIEAQIQ LLKAQGVATP IL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-28	4	93	26	113	LOB family transfactor Ramosa2.1
5ly0_B	7e-28	4	93	26	113	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019198082.1	1e-64	PREDICTED: LOB domain-containing protein 24-like
Swissprot	P59467	7e-34	LBD23_ARATH; LOB domain-containing protein 23
TrEMBL	A0A1S3YTT8	4e-44	A0A1S3YTT8_TOBAC; LOB domain-containing protein 24-like
TrEMBL	A0A1U7YHK4	4e-44	A0A1U7YHK4_NICSY; LOB domain-containing protein 24-like
STRING	XP_009798305.1	6e-45	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26620.1	3e-36	LOB domain-containing protein 23