PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001149.1_g00027.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 255aa MW: 28188.7 Da PI: 7.3604

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001149.1_g00027.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.6	1.2e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+l+ ++k +G g+W++ ++ g+ R++k+c++rw +yl Itr_sc001149.1_g00027.1 14 KGAWTKEEDERLIAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	56.6	5.8e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T +Edel+++++ +lG++ W++Ia +++ gRt++++k++w+++ Itr_sc001149.1_g00027.1 67 RGNFTHDEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.216	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	1.16E-29	13	108	IPR009057	Homeodomain-like
SMART	SM00717	5.1E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	2.0E-15	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	3.78E-11	16	61	No hit	No description
PROSITE profile	PS51294	28.266	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.1E-27	65	116	IPR009057	Homeodomain-like
SMART	SM00717	2.0E-16	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	4.1E-16	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	6.10E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MGRSPCCEKA HTNKGAWTKE EDERLIAYIK AHGEGCWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF THDEDELIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIRRKLLSRG 120 IDPTTHRPIN GGAEPPKETT ISFGAVKPED AENNNSITGK DSEPKKEENQ EETLLFKSEE 180 PQVAEACPDL NLELRISPPS SQETRPPPLP LEAAKSGGGG RVNGLCFACI LGIPNSIDCT 240 CNNNEDYSSG SSSSN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	2e-28	13	116	26	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019165639.1	1e-156	PREDICTED: myb-related protein 308-like
Swissprot	P81393	1e-112	MYB08_ANTMA; Myb-related protein 308
TrEMBL	A0A328DVJ8	1e-111	A0A328DVJ8_9ASTE; Uncharacterized protein
TrEMBL	A0A484L7M1	1e-111	A0A484L7M1_9ASTE; Uncharacterized protein
STRING	XP_009764613.1	1e-110	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	1e-102	myb domain protein 4

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]