PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001152.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 319aa    MW: 35032.8 Da    PI: 6.5074
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001152.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.84.7e-16227262134
                     GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                              C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ k+
  Itr_sc001152.1_g00001.1 227 CRHCGISEksTPMMRRGPEGPRTLCNACGLMWANKH 262
                              *****99999**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009792.7E-1384119IPR010399Tify domain
PROSITE profilePS5132015.11484119IPR010399Tify domain
PfamPF062001.2E-1386118IPR010399Tify domain
PROSITE profilePS5101713.185150192IPR010402CCT domain
PfamPF062031.5E-15150192IPR010402CCT domain
SMARTSM004011.3E-8221287IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.23E-11222267No hitNo description
CDDcd002021.02E-11226264No hitNo description
Gene3DG3DSA:3.30.50.101.0E-13226262IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440227254IPR000679Zinc finger, GATA-type
PfamPF003209.1E-14227262IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEGIGGSEDG VMQQHPQVHY LPEHDDHHHH GFMSNGNVME HDEHDDNGGG NGGSGGSECM  60
EGDVAAADPG NLSDNHSPIV VHGGNESSNQ LTLSFQGQVY VFDSVSPDKV QAVLLLLGGR  120
EVPPTTPMPI TNHNYRGLPT APQKLNVPQR LASLIRFREK RKERNFEKKI RYTVRKEVAL  180
RMQRNKGQFT SSKPTQDESA TASNWDSSQG WGTNGGGSQL QNQEIFCRHC GISEKSTPMM  240
RRGPEGPRTL CNACGLMWAN KHMYYNDVML TPERGTLRDL SKAVVPPLGH GTSLHRSEEN  300
GNVEASQMIR GTENGDDSL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019198873.10.0PREDICTED: GATA transcription factor 24-like
RefseqXP_019198875.10.0PREDICTED: GATA transcription factor 24-like
SwissprotQ8H1G05e-97GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A484M5431e-167A0A484M543_9ASTE; Uncharacterized protein
STRINGXP_006465167.11e-122(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26722348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.24e-83ZIM-like 1