PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001193.1_g00014.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Nin-like

Protein Properties

Length: 256aa MW: 29237.1 Da PI: 4.8827

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001193.1_g00014.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	50.5	4.1e-16	210	255	5	50
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 s++++s F+lp +AAkeL+v+ L + C ++G+kRWP+Rk++ Itr_sc001193.1_g00014.1 210 WSFDTISPLFHLPASQAAKELNVSEDKLTKMCKKLGVKRWPYRKLH 255 5899****************************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	14.47	186	256	IPR003035	RWP-RK domain
Pfam	PF02042	1.7E-15	212	255	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MANHVPSSSH SDFIYSLDFE DTSICDKLNL DSLLEIENEL YKLLEHSDEA EPTVESDPLV 60 QVIEDVLFKP LSEIVIHKKK KNRVKKTFCD SKTVTKQMIS SRFHLPLEDE DEQAIPFPSP 120 DQDYRPVLEI TDNSALDDQF NILFSPSIGE SSHTTAPVCD FYQEIDRDLD FMNVMTGEHH 180 DVATDAPLNV KEVSKSAKTI VLDKRTTKPW SFDTISPLFH LPASQAAKEL NVSEDKLTKM 240 CKKLGVKRWP YRKLHT

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4274	21	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	2e-11	RWP-RK domain-containing protein