PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001201.1_g00005.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bZIP

Protein Properties

Length: 419aa MW: 44955.6 Da PI: 9.603

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001201.1_g00005.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.1	4.5e-14	342	395	5	58
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 +r rr++kNRe+A rsR+RK+a++ eLee+v++L++ N++L+k+ el ++ ++ Itr_sc001201.1_g00005.1 342 RRRRRMIKNRESAARSRARKQAYTLELEEEVAKLKEINQELRKRQTELMEMQKN 395 689*********************************************999765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.8E-11	338	399	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.093	340	391	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	8.5E-13	342	391	No hit	No description
Pfam	PF00170	5.6E-12	342	395	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.04E-9	342	391	No hit	No description
PROSITE pattern	PS00036	0	345	360	IPR004827	Basic-leucine zipper domain
CDD	cd14707	3.06E-22	347	394	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MGSYLNFKNF GEMPLPEGNG GKPASPFPLT RQSSIYSLTF DELQTYGGLG KDLGSMNMED 60 LLKNIWTAEE SQAIASSACA ADTSIPGGNL QRQGSLTLPR TLSQKTVDEV WRDFHKETEN 120 GSKNDENGGG VSNFGQRQST LGEMTLEEFL VKAGVVREEI QPNGVGLSGG LSQLNSIGFQ 180 QPAQTPGGLS KQITANDKNA AIPGASNLML NAGGTQSSQQ QQLQLPLFSK QTTVAFASPM 240 QLGNNAQLAS PRVGGGPIVG MSSPLNTSLA QGSVMQDGAM SMAGLCNGAT TVIGGSPRNP 300 LSSDIVTKSN LDTSSLSPSP FAFNEGGRGR KAGSSLEKVV ERRRRRMIKN RESAARSRAR 360 KQAYTLELEE EVAKLKEINQ ELRKRQTELM EMQKNENEKV NMPWGGKPRC LRRTVTGPL

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MGSYLNFKNF GEMPLPEGNG GKPASPFPLT RQSSIYSLTF DELQTYGGLG KDLGSMNMED  60
LLKNIWTAEE SQAIASSACA ADTSIPGGNL QRQGSLTLPR TLSQKTVDEV WRDFHKETEN  120
GSKNDENGGG VSNFGQRQST LGEMTLEEFL VKAGVVREEI QPNGVGLSGG LSQLNSIGFQ  180
QPAQTPGGLS KQITANDKNA AIPGASNLML NAGGTQSSQQ QQLQLPLFSK QTTVAFASPM  240
QLGNNAQLAS PRVGGGPIVG MSSPLNTSLA QGSVMQDGAM SMAGLCNGAT TVIGGSPRNP  300
LSSDIVTKSN LDTSSLSPSP FAFNEGGRGR KAGSSLEKVV ERRRRRMIKN RESAARSRAR  360
KQAYTLELEE EVAKLKEINQ ELRKRQTELM EMQKNENEKV NMPWGGKPRC LRRTVTGPL

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the ABA-responsive element (ABRE). Mediates stress-responsive ABA signaling. {ECO:0000269\|PubMed:11884679, ECO:0000269\|PubMed:15361142}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA). {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:16284313}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019166400.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5 isoform X2
Refseq	XP_019166401.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5 isoform X2
Swissprot	Q9M7Q3	3e-95	AI5L6_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 6
TrEMBL	A0A1S4BC42	1e-178	A0A1S4BC42_TOBAC; ABSCISIC ACID-INSENSITIVE 5-like protein 7
STRING	XP_009791697.1	1e-172	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA776	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34000.2	1e-83	abscisic acid responsive elements-binding factor 3

Publications ? help Back to Top
Zhao Q, et al. Regulation and function of Arabidopsis AtGALK2 gene in abscisic acid response signaling. Mol. Biol. Rep., 2018. [PMID:24078097] Bao Y, et al. The tumor necrosis factor receptor-associated factor (TRAF)-like family protein SEVEN IN ABSENTIA 2 (SINA2) promotes drought tolerance in an ABA-dependent manner in Arabidopsis. New Phytol., 2014. 202(1): p. 174-87 [PMID:24350984] González-Grandío E,Cubas P Identification of gene functions associated to active and dormant buds in Arabidopsis. Plant Signal Behav, 2014. 9(2): p. e27994 [PMID:24518068] Xie M, et al. AtWNK9 is regulated by ABA and dehydration and is involved in drought tolerance in Arabidopsis. Plant Physiol. Biochem., 2014. 77: p. 73-83 [PMID:24561249] Kim EY,Seo YS,Park KY,Kim SJ,Kim WT Overexpression of CaDSR6 increases tolerance to drought and salt stresses in transgenic Arabidopsis plants. Gene, 2014. 552(1): p. 146-54 [PMID:25234727] Zhang H, et al. The RING finger ubiquitin E3 ligase SDIR1 targets SDIR1-INTERACTING PROTEIN1 for degradation to modulate the salt stress response and ABA signaling in Arabidopsis. Plant Cell, 2015. 27(1): p. 214-27 [PMID:25616872] Baek D, et al. A Role for Arabidopsis miR399f in Salt, Drought, and ABA Signaling. Mol. Cells, 2016. 39(2): p. 111-8 [PMID:26674968] Bao Y, et al. Overexpression of the NDR1/HIN1-Like Gene NHL6 Modifies Seed Germination in Response to Abscisic Acid and Abiotic Stresses in Arabidopsis. PLoS ONE, 2016. 11(2): p. e0148572 [PMID:26849212] Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Li X, et al. Dual Function of NAC072 in ABF3-Mediated ABA-Responsive Gene Regulation in Arabidopsis. Front Plant Sci, 2016. 7: p. 1075 [PMID:27486475] Wang Z, et al. Overexpressing Arabidopsis ABF3 increases tolerance to multiple abiotic stresses and reduces leaf size in alfalfa. Plant Physiol. Biochem., 2016. 109: p. 199-208 [PMID:27721135] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Kerr TCC, et al. Ectopic expression of two AREB/ABF orthologs increases drought tolerance in cotton (Gossypium hirsutum). Plant Cell Environ., 2018. 41(5): p. 898-907 [PMID:28098349] Lyzenga WJ,Sullivan V,Liu H,Stone SL The Kinase Activity of Calcineurin B-like Interacting Protein Kinase 26 (CIPK26) Influences Its Own Stability and that of the ABA-regulated Ubiquitin Ligase, Keep on Going (KEG). Front Plant Sci, 2017. 8: p. 502 [PMID:28443108] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655] Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions. Plant Mol. Biol., 2018. 97(1-2): p. 149-163 [PMID:29680877] Kim HJ, et al. Confirmation of Drought Tolerance of Ectopically Expressed AtABF3 Gene in Soybean. Mol. Cells, 2018. 41(5): p. 413-422 [PMID:29754472]