PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001208.1_g00008.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

G2-like

Protein Properties

Length: 360aa MW: 39264.4 Da PI: 6.1862

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001208.1_g00008.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	37.5	5.3e-12	48	72	1	25
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 +prlrWt +LHerFv+av+qLGG+ Itr_sc001208.1_g00008.1 48 RPRLRWTADLHERFVDAVTQLGGPS 72 59*********************86 PP
2	G2-like	49.7	8e-16	110	142	23	55
G2-like 23 GsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 G+ +AtPk+i+++m+vkgLtl h+kSHLQkYRl Itr_sc001208.1_g00008.1 110 GEIEATPKAIMRTMGVKGLTLFHLKSHLQKYRL 142 7778****************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.7E-28	45	73	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.8E-10	111	143	IPR006447	Myb domain, plants
SuperFamily	SSF46689	1.45E-5	113	144	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.7E-28	114	143	IPR009057	Homeodomain-like
Pfam	PF14379	5.0E-16	186	230	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MFPRLVQPRE TIGLTQEDLH LQGSNGNAQT HRVSGAGDPC LVLTSDPRPR LRWTADLHER 60 FVDAVTQLGG PSSHCLVGLH FILSGFLSDC ILITFNKAIM LILRDLDFEG EIEATPKAIM 120 RTMGVKGLTL FHLKSHLQKY RLGKQSQKDF GEASNDGLSA AYSLESPCSN NVPQNLPAPD 180 INEGYEVKEA LRVQMEVQSK LHLQVEAEKH LQIRQDAERR YLAMLEAACK ILADQIIGDV 240 VPDTEGENFQ GLGIKTALNQ PVYPSDPANI HTGPGSEEAS PRINTQCNDG STESCLTSHG 300 SPAGLPLDSS SPGGKKRILS MDSAAASFVW READTRTPGV HVVHMNSLGI NKCNEQKLSN

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MFPRLVQPRE TIGLTQEDLH LQGSNGNAQT HRVSGAGDPC LVLTSDPRPR LRWTADLHER  60
FVDAVTQLGG PSSHCLVGLH FILSGFLSDC ILITFNKAIM LILRDLDFEG EIEATPKAIM  120
RTMGVKGLTL FHLKSHLQKY RLGKQSQKDF GEASNDGLSA AYSLESPCSN NVPQNLPAPD  180
INEGYEVKEA LRVQMEVQSK LHLQVEAEKH LQIRQDAERR YLAMLEAACK ILADQIIGDV  240
VPDTEGENFQ GLGIKTALNQ PVYPSDPANI HTGPGSEEAS PRINTQCNDG STESCLTSHG  300
SPAGLPLDSS SPGGKKRILS MDSAAASFVW READTRTPGV HVVHMNSLGI NKCNEQKLSN

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ718036	8e-38	AJ718036.1 Nicotiana tabacum cDNA-AFLP-fragment BSTT23-3-460, cultivar Bright Yellow 2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019179367.1	0.0	PREDICTED: protein PHR1-LIKE 3-like isoform X1
TrEMBL	A0A2G3CDT5	1e-140	A0A2G3CDT5_CAPCH; Myb family transcription factor APL
STRING	Solyc04g015290.2.1	1e-139	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9764	20	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	2e-56	G2-like family protein