PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001225.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 333aa    MW: 37041.8 Da    PI: 6.1602
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001225.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.3e-171562148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             +g+W+t+Ed++l+d++++ G g+W ++++  g++R++k+c++rw +yl
  Itr_sc001225.1_g00001.1 15 KGPWSTDEDKKLADYIHENGIGNWQLVPKGAGLNRCGKSCRLRWTNYL 62
                             79********************************************97 PP
2Myb_DNA-binding54.52.6e-1768113147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              rg +++eE++ +++++kqlG++ W++Ia++++ gRt++++k++++++
  Itr_sc001225.1_g00001.1  68 RGCFSEEEEDMIIQLHKQLGNR-WSKIAAKLPAGRTDNEVKNYYNTH 113
                              899*******************.**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.2061062IPR017930Myb domain
SuperFamilySSF466894.39E-2713110IPR009057Homeodomain-like
SMARTSM007173.8E-131464IPR001005SANT/Myb domain
PfamPF002498.7E-161562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-221669IPR009057Homeodomain-like
CDDcd001672.15E-101762No hitNo description
PROSITE profilePS5129425.34563118IPR017930Myb domain
SMARTSM007177.0E-1767116IPR001005SANT/Myb domain
PfamPF002491.9E-1568113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2570118IPR009057Homeodomain-like
CDDcd001672.74E-1271114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGRYPCCKES SELKKGPWST DEDKKLADYI HENGIGNWQL VPKGAGLNRC GKSCRLRWTN  60
YLRPDIKRGC FSEEEEDMII QLHKQLGNRW SKIAAKLPAG RTDNEVKNYY NTHIKKKLMR  120
LGIDPITHKP LPPNLNHLLN NLPHNYYNSF NNNPIISPLE SILRLQANLT QMANAQLLQN  180
IAQFLNNNNN NIPLPLAQNI NNVPMLFNNN ITTFDNFNVG SNESPPLFDH PLSTTPNSYS  240
IESVLDQPSP MSNSLGFVPG NGDLVPRVLT SNNILSLPPL VSATPETSNS DQMFPTGAMQ  300
CGGGGGGDDD DFSALEKIFC DEGNSSMLES IFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-29121184108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019181998.11e-178PREDICTED: transcription factor MYB39-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.14e-65MYB-like 102