PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001235.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 260aa    MW: 28327.6 Da    PI: 6.6854
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001235.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.3e-11143190455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +h+ +Er RR++i +++ +L++l+P +    +k   Ka +L + ++YI+sLq
  Itr_sc001235.1_g00001.1 143 SHSLAERARREKISERMKTLQDLVPGC----NKVIGKALVLDEIINYIQSLQ 190
                              8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-18137208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.41E-11137194No hitNo description
PROSITE profilePS5088816.082139189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-18139207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-8143190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-11145195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MDPMMNGGGG AFQVANNVPF NLVEIWPFPI NASAAQFGLG APPNAHGLNR DHGPPVSDPM  60
ALDRRVDQNG GAARKRREDD ESAMGVSTSG NSLSENDSKR LKTARANENC EFKADSEGTS  120
GKPAEPPKDY IHVRARRGQA TDSHSLAERA RREKISERMK TLQDLVPGCN KVIGKALVLD  180
EIINYIQSLQ RQVEFLSMKL EAVNSRMTPS IEGFPSKDLP PQAFDASSLA FGSQTTRDYQ  240
SGTSPDWLHM QIGGGFERTT
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size. {ECO:0000269|PubMed:16902407}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform 1 is up-regulated by PI/AP3, SEP2, SEP3 and AP1, but repressed by AG. {ECO:0000269|PubMed:16902407}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019165077.10.0PREDICTED: transcription factor BPE-like
SwissprotQ0JXE73e-70BPE_ARATH; Transcription factor BPE
TrEMBLA0A1S4AX061e-127A0A1S4AX06_TOBAC; transcription factor bHLH79-like isoform X1
TrEMBLA0A1U7W7M11e-127A0A1U7W7M1_NICSY; transcription factor bHLH79 isoform X1
STRINGXP_009776012.11e-127(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12872471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.15e-94BIG PETAL P
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]