PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001239.1_g00007.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 406aa    MW: 44650.9 Da    PI: 5.1903
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001239.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH171.1e-052953321254
                              HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  Itr_sc001239.1_g00007.1 295 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 332
                              677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.973283332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-11293345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.85E-6293336No hitNo description
Gene3DG3DSA:4.10.280.101.4E-8297338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MADEFSTAAV CGGGWWNPTR NMFGSSLCSA SMNDIGSFAW PPSNHDAEVT AEVKGRPIDL  60
LGLNPSAIAT TTAATDDWNQ VLMLGLQDWI YSSNSNSGCL FFWQDNERGD RSYGSMLQED  120
LNYGVQQTLT VIPSSTQELS TSFPITSYNY PPNLLKSMFD DADPHHHQQC LISNQPVISY  180
APPTTVATTA AMTNYGPNLS DFSPSPPKFP SLLAPNNHHL HFPSSISLWN SPLTPCSFPS  240
PTFTDKKPVI TAKSNGSNKE LRDSSCLANK TSTAEPDFKR PRIETPSPLP TFKVRKEKLG  300
DRITALQQLV SPFGKTDTAS VLHEAIEYIK FLHDQVNVLI TPYKKNGSPS DQHCQQNTEE  360
VLDEEGLSKQ DLRSRGLCLV PMSSTFPVAA EATTDFWTPT FGANFR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019168601.10.0PREDICTED: transcription factor bHLH112-like
TrEMBLA0A1J6KRN66e-97A0A1J6KRN6_NICAT; Transcription factor bhlh112
TrEMBLD7SSM59e-97D7SSM5_VITVI; Uncharacterized protein
STRINGVIT_00s0274g00070.t011e-97(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8602486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.33e-50bHLH family protein