PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001239.1_g00009.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 221aa    MW: 24734.2 Da    PI: 5.4651
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001239.1_g00009.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.53.3e-105599655
                             HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                              ++ErrRR+++ +++ eLr+l+P+      + ++K +i + A+ YI +Lq
  Itr_sc001239.1_g00009.1 55 LQAERRRREKLSQRLLELRSLVPNI-----TNMTKETIITDAISYIEELQ 99
                             579*********************6.....58*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.11E-1546114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.91E-1047103No hitNo description
Gene3DG3DSA:4.10.280.103.1E-1348114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.5454998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-75499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-1155104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MIADTLKREF PDAAAAFVDL SSTEESGRKG GGRMDRKKKC VVEVQDDREF KSKNLQAERR  60
RREKLSQRLL ELRSLVPNIT NMTKETIITD AISYIEELQN NVKELSSQLL EMEATSGVEM  120
EVKAQTDSAA EDMKKFGIEA EVQVAQIDQN KLWIKVICHN RKGAFTKLME AMNVLGVHLY  180
DTSATTSKGA LLVTSTLELN QSGAAEAHQA QQFLQEIINS I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15762ERRRRE
25863RRRREK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00091SELEXTransfer from AT4G21330Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019175024.11e-139PREDICTED: transcription factor DYT1
TrEMBLA0A1U7WGU47e-80A0A1U7WGU4_NICSY; transcription factor DYSFUNCTIONAL TAPETUM 1-like isoform X1
STRINGXP_009773859.11e-80(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91071622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.18e-49bHLH family protein