PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001246.1_g00010.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WRKY

Protein Properties

Length: 307aa MW: 32701.1 Da PI: 6.9575

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001246.1_g00010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.3	6.7e-33	164	221	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers+edp+vv++tYeg+H h+ Itr_sc001246.1_g00010.1 164 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTVVITTYEGQHCHH 221 8******************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.4E-34	148	221	IPR003657	WRKY domain
SuperFamily	SSF118290	4.84E-28	155	221	IPR003657	WRKY domain
PROSITE profile	PS50811	29.964	158	223	IPR003657	WRKY domain
SMART	SM00774	4.2E-38	163	222	IPR003657	WRKY domain
Pfam	PF03106	1.3E-25	164	221	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MNDKGKFDHH DFTAESSGWA LRGDADGAYF FGAGGVDKEE SSILSDFGWN FQPLDGISGG 60 GGGGGGGVGA FDLIHADLAG NGCVFGSGGA DESPSGDGEA TATQAEPATS SSSEEAAAEK 120 PSSSSRPPPP PADTTSSKVK KKGPKRIKQP RFAFMTKSEV DHLEDGYRWR KYGQKAVKNS 180 PFPRSYYRCT NSKCTVKKRV ERSSEDPTVV ITTYEGQHCH HAVGFRGGFI GHEASAYMAR 240 LNPLAVQSYL PGLTGQSHTL PIQSHQNLTH NIQSHASPDP SRRPTPPQLP PDEGLLGDMV 300 PPGMWNK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-25	154	220	8	74	Probable WRKY transcription factor 4
2lex_A	3e-25	154	220	8	74	Probable WRKY transcription factor 4
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019170916.1	1e-169	PREDICTED: probable WRKY transcription factor 57
Refseq	XP_019170917.1	1e-169	PREDICTED: probable WRKY transcription factor 57
TrEMBL	A0A1S3ZND3	1e-93	A0A1S3ZND3_TOBAC; probable WRKY transcription factor 57
STRING	XP_009775814.1	5e-93	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8031	22	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69310.2	1e-54	WRKY DNA-binding protein 57