PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001251.1_g00013.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family CPP
Protein Properties Length: 544aa    MW: 59451.5 Da    PI: 9.1823
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001251.1_g00013.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.38.6e-15138174239
                      TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                              ++k+CnCk+s+Clk+YCeCfa+g++C+  C+C++C+N+
  Itr_sc001251.1_g00013.1 138 KQKECNCKNSRCLKLYCECFASGTFCDG-CNCQNCQNN 174
                              79**************************.********8 PP
2TCR51.52e-16222260139
                      TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                              k+++gCnCkks ClkkYCeCf+a+  Cse+CkC dCkN 
  Itr_sc001251.1_g00013.1 222 KHNRGCNCKKSGCLKKYCECFQANILCSENCKCADCKNF 260
                              5899**********************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.6E-16137177IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.895138262IPR005172CRC domain
PfamPF036383.9E-11139174IPR005172CRC domain
SMARTSM011144.2E-18222263IPR033467Tesmin/TSO1-like CXC domain
PfamPF036387.6E-13225260IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MKQSDVTAFS KTEASELPPK KLGRQFDFTV MRKSSASEIL SEHPQAVLQS KLLALAKRQA  60
MMFATQSPPP PPSTAQVKTI LPSTTRLKSP RPTKAVARVF RTRPVQSLPR VMQQVVKTEP  120
PNSQYNSTMR QKNGTPKKQK ECNCKNSRCL KLYCECFASG TFCDGCNCQN CQNNIVHEVN  180
RKIALNAILE RNPNAFRPKI TSSPQGLKNG VMEVGEDSPS GKHNRGCNCK KSGCLKKYCE  240
CFQANILCSE NCKCADCKNF DGSNGKSSLF HWAHTNLAAF IQAHATINGA ISNSWFVPTP  300
PTKKRKNGEM PSGDNSTDKS NKFSQSQQDA SSGPLCAAPY DFAIRSVAES SNCKYRSLLA  360
SIIQLQNVAE LCSLLVTVSK EAAKMLTEKK QARNDDVGID RNKIQVAAAQ KSKDFCHAQK  420
FHENKAKRIQ SSTSGCNGDE FQNGRAVSSG TPALMCDNGH DSVPAAEFAT GISGCNARIS  480
VNTSSGDHFS TLYAEQEKII LTTFCSFLNE LVTYASIKET TFSPPSNEKS GSWQLPMENG  540
QCPG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A8e-3013927311134Protein lin-54 homolog
5fd3_B8e-3013927311134Protein lin-54 homolog
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019197056.10.0PREDICTED: protein tesmin/TSO1-like CXC 6
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24012455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-97Tesmin/TSO1-like CXC domain-containing protein