PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001265.1_g00006.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 170aa    MW: 17843.7 Da    PI: 6.246
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001265.1_g00006.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.92e-094181954
                             HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                              r RR+ri ++f  L++l+P        K++ +++L +A++Y+k L
  Itr_sc001265.1_g00006.1 41 ARERRHRISDRFKILQSLVPGG-----SKMDTVSMLDEAIHYVKFL 81
                             699*****************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.3393281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.05E-133790IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-123887IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.57E-133885No hitNo description
Gene3DG3DSA:4.10.280.104.5E-123885IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-74181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MDNSACSSSV VNNSNEENRN KKKKSGGKVV KLSTDPQSVA ARERRHRISD RFKILQSLVP  60
GGSKMDTVSM LDEAIHYVKF LKTQIWLHQT MINFAAADDP SYCYPAAAAC GGGGDDVLVG  120
DYNVQSSSQA NYGVGPGNYT MAGQGGAGGG GDGGAGESMA AVDDAFSVYY
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2575284e-56KP257528.1 Salvia miltiorrhiza clone 95 basic helix-loop-helix transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019186243.12e-64PREDICTED: transcription factor LAX PANICLE
TrEMBLA0A2I4HT544e-44A0A2I4HT54_JUGRE; transcription factor bHLH140-like
STRINGXP_009609302.11e-42(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117141723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.13e-32APRATAXIN-like