PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001280.1_g00009.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HD-ZIP

Protein Properties

Length: 222aa MW: 25481.7 Da PI: 6.1482

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001280.1_g00009.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.7	1.3e-20	73	126	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t+eql++Le+ Fe++ +++ e++ +LAk+lgL rq+ vWFqNrRa++k Itr_sc001280.1_g00009.1 73 KKKRLTTEQLDALEKSFEEEIKLDPERKMRLAKELGLHPRQIAVWFQNRRARWK 126 55679************************************************9 PP
2	HD-ZIP_I/II	117.8	5.8e-38	73	163	2	92
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 kk+rl++eq+ +LE+sFeee kL+perK++la+eLgl+prq+avWFqnrRAR+k+kqlE+ +++Lk++++ +++e+++Le+ev +L Itr_sc001280.1_g00009.1 73 KKKRLTTEQLDALEKSFEEEIKLDPERKMRLAKELGLHPRQIAVWFQNRRARWKAKQLERLCDSLKHEFELVSREKQKLEEEVVAL 158 9************************************************************************************* PP HD-ZIP_I/II 88 reelk 92 r+ l+ Itr_sc001280.1_g00009.1 159 RSILR 163 98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.27E-20	61	130	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.346	68	128	IPR001356	Homeobox domain
SMART	SM00389	2.2E-18	70	132	IPR001356	Homeobox domain
CDD	cd00086	1.22E-17	73	129	No hit	No description
Pfam	PF00046	7.3E-18	73	126	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.3E-21	75	132	IPR009057	Homeodomain-like
PRINTS	PR00031	1.5E-5	99	108	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	103	126	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.5E-5	108	124	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MEWNGCNNNN LTRPFVPRPP LPSDNASFSF LYTYNYDQFP GIDMKSGSSS SVQGEGAQFM 60 GGIEKNGLGS HDKKKRLTTE QLDALEKSFE EEIKLDPERK MRLAKELGLH PRQIAVWFQN 120 RRARWKAKQL ERLCDSLKHE FELVSREKQK LEEEVVALRS ILRDEATKKQ QVSTTGHTEM 180 SGEETVESTS IPSCNYNNMF NVDDCTTLMP PPYWPNLPST YP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	120	128	RRARWKAKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019157172.1	1e-119	PREDICTED: putative homeobox-leucine zipper protein ATHB-51
Swissprot	Q9LZR0	4e-52	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A1S4BPS4	3e-78	A0A1S4BPS4_TOBAC; putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A1U7V734	3e-78	A0A1U7V734_NICSY; putative homeobox-leucine zipper protein ATHB-51
STRING	XP_009758049.1	4e-79	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3869	22	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	2e-54	homeobox 51

Publications ? help Back to Top
Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]