PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001281.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bZIP

Protein Properties

Length: 172aa MW: 19031.2 Da PI: 6.7851

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001281.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	39.6	1.2e-12	30	85	5	60
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 ++ +r+++NRe+ArrsR RK++ ++ L v +L +eN++ ++ +++ +++ Itr_sc001281.1_g00001.1 30 RKRKRMISNRESARRSRMRKQKHLDDLMAQVSQLRKENSQIVTAMNATTQQFLNVE 85 6789**********************************998888777777766655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.9E-11	20	76	No hit	No description
SMART	SM00338	6.5E-17	26	90	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.484	28	91	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.6E-12	30	82	No hit	No description
Pfam	PF00170	7.6E-10	30	72	IPR004827	Basic-leucine zipper domain
CDD	cd14702	2.75E-21	31	81	No hit	No description
PROSITE pattern	PS00036	0	33	48	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MASSGVTSPG SCVLQTSGSE EDLQTLMDQR KRKRMISNRE SARRSRMRKQ KHLDDLMAQV 60 SQLRKENSQI VTAMNATTQQ FLNVEAHNSI LRAQVAELSH RLDALNEIAS FVNSNNGGFA 120 ALQEEVNYCY GNFESPPADA FFPATANNNS WNFLSGNQPI ITSASAADIL QY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	29	50	RKRKRMISNRESARRSRMRKQK
2	42	49	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269\|PubMed:23461773}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019165604.1	1e-100	PREDICTED: bZIP transcription factor 11-like
Swissprot	C0Z2L5	5e-45	BZP44_ARATH; bZIP transcription factor 44
TrEMBL	A0A484L690	2e-70	A0A484L690_9ASTE; Uncharacterized protein
STRING	XP_002512945.1	5e-63	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA537	24	123

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75390.1	2e-47	basic leucine-zipper 44

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Pedrotti L, et al. Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness. Plant Cell, 2018. 30(2): p. 495-509 [PMID:29348240]