PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001284.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 247aa    MW: 27349.7 Da    PI: 9.6811
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001284.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-18117165355
                      AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              y+GVr ++ +grW AeIrd       r r++lg+f+t+eeAa+a++ a++ l+g
  Itr_sc001284.1_g00003.1 117 YRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTPEEAARAYDVAARWLRG 165
                              9*******.**********32....25*********************997776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.0E-33116182IPR001471AP2/ERF domain
PROSITE profilePS5103222.313116173IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.1E-29116173IPR001471AP2/ERF domain
PfamPF008475.1E-13116165IPR001471AP2/ERF domain
PRINTSPR003672.7E-10117128IPR001471AP2/ERF domain
CDDcd000185.96E-30117174No hitNo description
SuperFamilySSF541711.5E-21117173IPR016177DNA-binding domain
PRINTSPR003672.7E-10139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MSSSSRFHMF QTTQNLDSLL LKQHQYSYFD DMQSFHSISP FPVDGPPPPP PQSAGISGDF  60
SVCEEVKGES PVLEGIAAVV GERVLFGRPE NLRDEEIAAA AAAGVEKRSG EEKQRSYRGV  120
RKRPWGRWSA EIRDRIGRCR HWLGTFDTPE EAARAYDVAA RWLRGSKART NFEIPPVLPP  180
SSSSSSSSET RKKRKLSNGG DEEVKNKTKK NKCAVVTSAA QLFSSFQNTA IAKGNNLPLE  240
LDLKLSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-151171721571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017251324.18e-55PREDICTED: ethylene-responsive transcription factor ERF084
SwissprotQ9M8M52e-30ERF84_ARATH; Ethylene-responsive transcription factor ERF084
TrEMBLA0A161YIG72e-53A0A161YIG7_DAUCS; Uncharacterized protein
STRINGPOPTR_0017s08090.13e-53(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA115522225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.14e-32ERF family protein