PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001294.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 271aa    MW: 30716.3 Da    PI: 6.2383
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001294.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37e-081391048
                             HHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding 10 ellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             ++l + + + G g+W++++   g+ R +k+c++rw +yl
  Itr_sc001294.1_g00001.1  1 QKLRNHILKNGHGCWSSVPINAGLQRNGKSCRLRWINYL 39
                             578899999****************************97 PP
2Myb_DNA-binding49.31.1e-154590148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             rg ++ +E+e ++ ++  lG++ W+ Ia++++ gRt++++k++w++yl
  Itr_sc001294.1_g00001.1 45 RGTFSLQEEETILALHGILGNK-WSQIAQHLP-GRTDNEIKNFWHSYL 90
                             899*******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001675.96E-4139No hitNo description
PfamPF002495.5E-6139IPR001005SANT/Myb domain
SMARTSM0071713141IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-13146IPR009057Homeodomain-like
PROSITE profilePS5129410.792139IPR017930Myb domain
SuperFamilySSF466892.7E-212596IPR009057Homeodomain-like
PROSITE profilePS5129425.1234094IPR017930Myb domain
SMARTSM007171.1E-144492IPR001005SANT/Myb domain
PfamPF002494.7E-144590IPR001005SANT/Myb domain
CDDcd001673.63E-104790No hitNo description
Gene3DG3DSA:1.10.10.601.2E-244794IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
QKLRNHILKN GHGCWSSVPI NAGLQRNGKS CRLRWINYLR PGLKRGTFSL QEEETILALH  60
GILGNKWSQI AQHLPGRTDN EIKNFWHSYL KKKVAKMAEA ERSMENGECS IHSVKSTSQS  120
SGLESFGQIE GSLADTDESI PNNLDFPKTA QKSNLPKVLF AEWLSLDQFN NGQDFQTANH  180
AVLPRNNFGY NGSELQDPFI HGFMLNEDTY GHGIQPVLNN GTVDDLFQPE LKFEDQITVS  240
GFAEFFSGGF NVSSNDLMYD ELYLRRNFRE E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-18269440108B-MYB
1h8a_C5e-1819436128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019194995.10.0PREDICTED: transcription factor LAF1-like
TrEMBLA0A1U8G9M01e-112A0A1U8G9M0_CAPAN; Transcription factor MYB46
TrEMBLA0A2G2Z0U61e-112A0A2G2Z0U6_CAPAN; transcription factor LAF1-like
TrEMBLA0A2G3CW611e-112A0A2G3CW61_CAPCH; Transcription factor MYB46
STRINGXP_009629823.11e-115(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.12e-49myb domain protein 18