PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001296.1_g00009.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HD-ZIP

Protein Properties

Length: 231aa MW: 26635.1 Da PI: 8.8827

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001296.1_g00009.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.3	2.2e-17	31	82	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +f++eq++ Le+ F+ + ++ ++++ + A+ lgL+ rqV +WFqN+Ra++k Itr_sc001296.1_g00009.1 31 KRFSNEQVKSLETIFKLETKLETKKKLQVARDLGLQPRQVAIWFQNKRARWK 82 58*************************************************9 PP
2	HD-ZIP_I/II	111.2	7.1e-36	30	117	3	90
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +r+s+eqvk+LE+ F+ e+kLe+++K ++ar+Lglqprqva+WFqn+RAR+k+kq+E++y++Lk+++d+l+ + ++L+ke+e+L Itr_sc001296.1_g00009.1 30 SKRFSNEQVKSLETIFKLETKLETKKKLQVARDLGLQPRQVAIWFQNKRARWKSKQIEEEYRVLKAKFDNLNVQFDSLKKEKESLL 115 69*********************************************************************************997 PP HD-ZIP_I/II 89 ee 90 + Itr_sc001296.1_g00009.1 116 MQ 117 55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.59E-17	16	85	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-17	18	83	IPR009057	Homeodomain-like
SMART	SM00389	8.2E-14	24	88	IPR001356	Homeobox domain
PROSITE profile	PS50071	16.892	24	84	IPR001356	Homeobox domain
Pfam	PF00046	8.0E-15	31	82	IPR001356	Homeobox domain
CDD	cd00086	3.24E-11	32	85	No hit	No description
PRINTS	PR00031	6.8E-5	55	64	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	59	82	IPR017970	Homeobox, conserved site
PRINTS	PR00031	6.8E-5	64	80	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.5E-11	84	125	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MEEEEEHQAL ENHESVGCQK GSKKKKSKNS KRFSNEQVKS LETIFKLETK LETKKKLQVA 60 RDLGLQPRQV AIWFQNKRAR WKSKQIEEEY RVLKAKFDNL NVQFDSLKKE KESLLMQSEK 120 LRSELEKGCA GQKKRQETKD MEMPSGSNNK VTNYESKEST VNGGRSIVRV EEDVEKDKAL 180 LAEKLKQKEE AEFLNLGELG GSPLASPEQW CSGSLNIPFD QSCGTSKWWD F

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00320	DAP	Transfer from AT2G46680	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019189091.1	1e-127	PREDICTED: homeobox-leucine zipper protein ATHB-12-like
TrEMBL	A0A1J6KVH9	8e-68	A0A1J6KVH9_NICAT; Homeobox-leucine zipper protein athb-12
STRING	XP_009611805.1	4e-67	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2041	23	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	3e-29	homeobox 7