PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001303.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C3H
Protein Properties Length: 337aa    MW: 37625.4 Da    PI: 8.3647
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001303.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.76.3e-061433827
                             GGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  8 ffartGtCkyGdrCkFaHgp 27
                             f++ +  CkyG +Ck++H++
  Itr_sc001303.1_g00002.1 14 FYLTSAGCKYGKSCKYNHSR 33
                             7888889***********95 PP
2zf-CCCH41.72e-135479227
                             -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                             ++++C++++rtG CkyG++C+F+H++
  Itr_sc001303.1_g00002.1 54 GEKECPYYMRTGSCKYGSNCRFHHPE 79
                             7899********************96 PP
3zf-CCCH32.51.4e-10222248127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              +++++C++f +tG Cky ++CkF+H++
  Itr_sc001303.1_g00002.1 222 PGQPECSYFIKTGDCKYRSNCKFHHPK 248
                              5789*********************96 PP
4zf-CCCH39.21.1e-12268293227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                              ++++C++++r+G+Ck+G++CkF H++
  Itr_sc001303.1_g00002.1 268 DQAICSYYSRYGICKFGPNCKFDHPE 293
                              6899********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035615133IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.531434IPR000571Zinc finger, CCCH-type
PfamPF146082.12131No hitNo description
SuperFamilySSF902291.57E-75281IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.7465280IPR000571Zinc finger, CCCH-type
SMARTSM003564.0E-75279IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-115479IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-65879IPR000571Zinc finger, CCCH-type
SMARTSM003560.0014221248IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.619221249IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-5223248IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-5225251IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-4227249IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-6264291IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6266293IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.666266294IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-10268293IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4271293IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MNQLCGKFHL TDSFYLTSAG CKYGKSCKYN HSREKVPVSP IQEFNFLGLP MRPGEKECPY  60
YMRTGSCKYG SNCRFHHPEP TLMAGDDSSS GYSKGRSMPV QGSSQSTVTS WSSSRPTNET  120
TSYVPPMMYP PTQSIPSPTP EWNNYQALYL SMPSSFQMFI MLECCGPFVD FFLKFCGPAP  180
VYQASEKSLP TPPAFAMSNS VAEKFNPRHS LPLLGEDYPE RPGQPECSYF IKTGDCKYRS  240
NCKFHHPKAQ LTRTQTLLND KGLPLRPDQA ICSYYSRYGI CKFGPNCKFD HPENYSHSPS  300
SGWSEFDQPP FGNPDSTNAA RVARKGSGSG SLVQQSV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019160818.10.0PREDICTED: zinc finger CCCH domain-containing protein 67
TrEMBLA0A484N3D81e-160A0A484N3D8_9ASTE; Uncharacterized protein
STRINGXP_009791086.11e-123(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44682343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.18e-75C3H family protein