PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001304.1_g00006.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WRKY

Protein Properties

Length: 236aa MW: 26986.7 Da PI: 8.0848

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001304.1_g00006.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.9	1.4e-30	53	111	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+v+rs++d +v++itY+++Hnh+ Itr_sc001304.1_g00006.1 53 SDSWSWRKYGQKPIKGSPHPRGYYRCSTSkGCSAKKQVQRSRTDASVLIITYTSTHNHP 111 69**********************9988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.0E-32	45	112	IPR003657	WRKY domain
PROSITE profile	PS50811	30.917	47	113	IPR003657	WRKY domain
SuperFamily	SSF118290	3.4E-26	50	113	IPR003657	WRKY domain
SMART	SM00774	6.4E-36	52	112	IPR003657	WRKY domain
Pfam	PF03106	2.9E-26	54	111	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MDNTKSPASE FKNSRTLRRA SSSKKRNMAQ KVVVRVKLGE GDGRKRKSEG PPSDSWSWRK 60 YGQKPIKGSP HPRGYYRCST SKGCSAKKQV QRSRTDASVL IITYTSTHNH PGPPEDNNPT 120 TPVPEEEGEE AQMEQHRTRL KDNGYEEDSF HYSQSPFNTS EHIIINRPDD NYLLGTSSSF 180 LLDGEPLSCR YPHFMDFSTP KSQENYDFYD ELEELPHTSS FITYTFFKDT ISVNSI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	7e-21	54	113	18	79	Disease resistance protein RRS1
5w3x_D	7e-21	54	113	18	79	Disease resistance protein RRS1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF927160	1e-50	JF927160.1 Panax quinquefolius WRKY4 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019163606.1	1e-118	PREDICTED: probable WRKY transcription factor 65 isoform X1
TrEMBL	M5VMY2	2e-69	M5VMY2_PRUPE; Uncharacterized protein
STRING	EMJ02564	4e-70	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11281	20	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	4e-36	WRKY DNA-binding protein 65