PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001312.1_g00003.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 269aa    MW: 30123.8 Da    PI: 6.1206
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001312.1_g00003.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.5e-13105150855
                              HHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   8 rErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                               E+ RR ++++ f  L+ llP+ +   +++K++K +iL +Av++Ik L+
  Itr_sc001312.1_g00003.1 105 TEKERRMKMRNMFTDLQALLPHqL---HHPKVDKCTILDEAVNHIKRLE 150
                              6*********************77...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.58997149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.21E-11100154No hitNo description
SuperFamilySSF474591.31E-14100165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-13100163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-6103155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.2E-10105150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd021160.00299228261No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MDVNGVENSF LLENNEEWGF LNSDYCDGES NEKSRKKVAD FNASYIYSHY SSPLPPKVDN  60
VGTSSTGVTR MVVLSGNNHS GDDDKNNEVD VREPLPGNHE RHLWTEKERR MKMRNMFTDL  120
QALLPHQLHH PKVDKCTILD EAVNHIKRLE STLSDLQRQK LEILESWKTT TILGADECGT  180
FASNDNGTMM MMRRSIPHMT SSISSPDVFK TWTSPNMTLN VCGNDAHINI CCSKKIGVLA  240
AVCSVLEKYK IDVISAHVSS DXIIIGACT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019165690.11e-115PREDICTED: transcription factor bHLH95-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13242369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.14e-28bHLH family protein