PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001316.1_g00005.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HD-ZIP

Protein Properties

Length: 823aa MW: 88866.6 Da PI: 5.8947

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001316.1_g00005.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.1	2.4e-21	135	190	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+k+l L+ rqVk+WFqNrR+++k Itr_sc001316.1_g00005.1 135 KKRYHRHTPQQIQELEALFKECPHPDEKQRSELSKRLCLENRQVKFWFQNRRTQMK 190 688999***********************************************999 PP
2	START	184.1	7.7e-58	333	555	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla 77 ela++a++elvk a+ +ep+Wv+ + e n++e+l++f++ + + +ea+r++g+v+ ++ lve+l+d + +W e+++ Itr_sc001316.1_g00005.1 333 ELALAAMDELVKVAQTDEPLWVRGVeggrEVMNQEEYLRSFSPCIGlrpsgFVSEASRETGMVIINSLALVETLMDCG-KWGEMFP 417 5899*******************9999999*****99999****************************.*** PP ....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEE CS START 78 ....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgi 152 + +t++vis g galqlm+aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d ++ + ++ R +lpSg+ Itr_sc001316.1_g00005.1 418 cliaRTSTTDVISGGmggtrnGALQLMYAELQVLSPLVPiRKVNFLRFCKQHAEGVWAVVDVSIDAIRQSSAAPNATR--RLPSGC 501 ****************************************************************9998999999..** PP EEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 153 liepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++++++ng+skvtwveh++++++ +h+l+r l++ g+ +ga++w atlq+qce+ Itr_sc001316.1_g00005.1 502 VVQDMPNGYSKVTWVEHAEYDESEVHQLYRGLIGAGMGFGAQRWIATLQQQCEC 555 **************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.4E-22	121	192	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.25E-20	122	192	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.346	132	192	IPR001356	Homeobox domain
SMART	SM00389	1.9E-17	133	196	IPR001356	Homeobox domain
CDD	cd00086	2.78E-18	134	192	No hit	No description
Pfam	PF00046	8.3E-19	135	190	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	167	190	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	39.06	324	558	IPR002913	START domain
SuperFamily	SSF55961	3.48E-30	326	555	No hit	No description
CDD	cd08875	6.06E-114	328	554	No hit	No description
SMART	SM00234	6.5E-43	333	555	IPR002913	START domain
Pfam	PF01852	3.1E-50	333	555	IPR002913	START domain
SuperFamily	SSF55961	1.1E-24	582	816	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009827	Biological Process	plant-type cell wall modification
GO:0042335	Biological Process	cuticle development
GO:0043481	Biological Process	anthocyanin accumulation in tissues in response to UV light
GO:0048765	Biological Process	root hair cell differentiation
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 823 aa Download sequence Send to blast
MNFGGFLDNS SSIGSGGEGD VVGGGARIVA DIPYNSSSDM ASGAIAQPSL VPHSLTTKSM 60 FNSPGLSLGL QTGMEGGQGE VARVPDSYEA NNSNTNNSVG RRSREEEPES RSGSDNFEGA 120 SGDDQDAADD KPPRKKRYHR HTPQQIQELE ALFKECPHPD EKQRSELSKR LCLENRQVKF 180 WFQNRRTQMK TQLERHENSI LRQENDKLRA ENMSIREAMR NPLCTNCGGP AMIGEISLEE 240 QHLRIENVRL KDELDRVCAL AGKFLGRPVS SLPNINSSLE LGVGGNGFGG LSVVPSTVPI 300 APPPPPDFAG ALPTRQGSGV GIERSLERSM YLELALAAMD ELVKVAQTDE PLWVRGVEGG 360 REVMNQEEYL RSFSPCIGLR PSGFVSEASR ETGMVIINSL ALVETLMDCG KWGEMFPCLI 420 ARTSTTDVIS GGMGGTRNGA LQLMYAELQV LSPLVPIRKV NFLRFCKQHA EGVWAVVDVS 480 IDAIRQSSAA PNATRRLPSG CVVQDMPNGY SKVTWVEHAE YDESEVHQLY RGLIGAGMGF 540 GAQRWIATLQ QQCECLAILM SSALPTRDHT AISPSGRRSM LKLAQRMTNN FCAGVCASSV 600 HQWNKLCAGN VDEDVRVMTR KSVDDPGEPS GIVLSAATSV WLPVSPQRLF DFLRDERLRS 660 EWDILSNGGP MHEMAHIAKG QDHGNCVSLL RASAMSSNQS SMLILQETCI NAAGSLVVYA 720 PVDIPAMHVV MNGGDSAYVA LLPSGFAIVP DGPGSRGPAS ATNGPCSNGG PYQRVSGSLL 780 TVAFQILVNS LPTAKLTVES VETVNNLISC TVQKIKAALH CES

Sequence ? help Back to Top

Protein Sequence Length: 823 aa Download sequence Send to blast

MNFGGFLDNS SSIGSGGEGD VVGGGARIVA DIPYNSSSDM ASGAIAQPSL VPHSLTTKSM  60
FNSPGLSLGL QTGMEGGQGE VARVPDSYEA NNSNTNNSVG RRSREEEPES RSGSDNFEGA  120
SGDDQDAADD KPPRKKRYHR HTPQQIQELE ALFKECPHPD EKQRSELSKR LCLENRQVKF  180
WFQNRRTQMK TQLERHENSI LRQENDKLRA ENMSIREAMR NPLCTNCGGP AMIGEISLEE  240
QHLRIENVRL KDELDRVCAL AGKFLGRPVS SLPNINSSLE LGVGGNGFGG LSVVPSTVPI  300
APPPPPDFAG ALPTRQGSGV GIERSLERSM YLELALAAMD ELVKVAQTDE PLWVRGVEGG  360
REVMNQEEYL RSFSPCIGLR PSGFVSEASR ETGMVIINSL ALVETLMDCG KWGEMFPCLI  420
ARTSTTDVIS GGMGGTRNGA LQLMYAELQV LSPLVPIRKV NFLRFCKQHA EGVWAVVDVS  480
IDAIRQSSAA PNATRRLPSG CVVQDMPNGY SKVTWVEHAE YDESEVHQLY RGLIGAGMGF  540
GAQRWIATLQ QQCECLAILM SSALPTRDHT AISPSGRRSM LKLAQRMTNN FCAGVCASSV  600
HQWNKLCAGN VDEDVRVMTR KSVDDPGEPS GIVLSAATSV WLPVSPQRLF DFLRDERLRS  660
EWDILSNGGP MHEMAHIAKG QDHGNCVSLL RASAMSSNQS SMLILQETCI NAAGSLVVYA  720
PVDIPAMHVV MNGGDSAYVA LLPSGFAIVP DGPGSRGPAS ATNGPCSNGG PYQRVSGSLL  780
TVAFQILVNS LPTAKLTVES VETVNNLISC TVQKIKAALH CES

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00421	DAP	Transfer from AT4G00730	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019152252.1	0.0	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A2G3DE11	0.0	A0A2G3DE11_CAPCH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
STRING	Solyc01g091630.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1626	24	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61150.1	0.0	homeodomain GLABROUS 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]