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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Itr_sc001348.1_g00003.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
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| Family | WRKY | ||||||||
| Protein Properties | Length: 493aa MW: 54728.1 Da PI: 7.6879 | ||||||||
| Description | WRKY family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | WRKY | 105.4 | 2.9e-33 | 171 | 228 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
+DgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkver+ d++++ei+Y+g+Hnh+k
Itr_sc001348.1_g00003.1 171 EDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERNL-DGHITEIVYKGNHNHPK 228
8****************************************.***************85 PP
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| 2 | WRKY | 106.2 | 1.7e-33 | 335 | 393 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
ldDgy+WrKYGqK+vkg+++prsYY+Ct+ gCpv+k+ver+++d ++v++tYeg+Hnh+
Itr_sc001348.1_g00003.1 335 LDDGYRWRKYGQKVVKGNPNPRSYYKCTFLGCPVRKHVERASHDLRAVITTYEGKHNHD 393
59********************************************************7 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50811 | 23.674 | 165 | 229 | IPR003657 | WRKY domain |
| Gene3D | G3DSA:2.20.25.80 | 1.5E-27 | 166 | 229 | IPR003657 | WRKY domain |
| SuperFamily | SSF118290 | 8.24E-25 | 167 | 229 | IPR003657 | WRKY domain |
| SMART | SM00774 | 2.1E-35 | 170 | 228 | IPR003657 | WRKY domain |
| Pfam | PF03106 | 7.6E-25 | 171 | 227 | IPR003657 | WRKY domain |
| Gene3D | G3DSA:2.20.25.80 | 5.4E-37 | 320 | 395 | IPR003657 | WRKY domain |
| SuperFamily | SSF118290 | 2.62E-29 | 327 | 395 | IPR003657 | WRKY domain |
| PROSITE profile | PS50811 | 37.906 | 330 | 395 | IPR003657 | WRKY domain |
| SMART | SM00774 | 2.7E-39 | 335 | 394 | IPR003657 | WRKY domain |
| Pfam | PF03106 | 1.2E-25 | 336 | 393 | IPR003657 | WRKY domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 493 aa Download sequence Send to blast |
MSSSGGSLNT CVDNSHHHNS YSSFSSFSFT DLLSNNEESK NPEKGLGSSS SSFNWGISDT 60 HEIPKFKSFP PATLPISPSP VSPSSFLNIP PSLSPSVLLD SPVFFSTSNE EQMSRQQQPN 120 MGSADFSTMK TDIKPELPQT HSFSQENPAM QQPAMVHYSQ PSQYARAQKA EDGYNWRKYG 180 QKQVKGSENP RSYYKCTFPN CPTKKKVERN LDGHITEIVY KGNHNHPKPQ STRRSSSSSQ 240 SVQINPESFN IDVANQSNMM LGSTQRDSFI TPENSSASFG DEDLEQGSPS RDDDENEPEA 300 KRWKGDNENE AISSASRTVR EPRIVVQTTS DIDILDDGYR WRKYGQKVVK GNPNPRSYYK 360 CTFLGCPVRK HVERASHDLR AVITTYEGKH NHDVPAARGS GGYSLNKPQQ PQPAGNMGSS 420 AAPVALRPST MPNHSLNYQN AIFNPRPQTT QSQQPITLQM LQRPAGNLGY STGSYMPTGK 480 DEPKDDFFST FLN |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1wj2_A | 1e-32 | 171 | 396 | 8 | 78 | Probable WRKY transcription factor 4 |
| 2lex_A | 1e-32 | 171 | 396 | 8 | 78 | Probable WRKY transcription factor 4 |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcription factor. Interacts specifically with the W box (5'-TTGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Involved in defense responses. Required for resistance to the necrotrophic fungal pathogen B.cinerea (PubMed:17059405, PubMed:21990940). Regulates the antagonistic relationship between defense pathways mediating responses to the bacterial pathogen P. syringae and the necrotrophic pathogen B.cinerea (PubMed:17059405). Required for the phytoalexin camalexin synthesis following infection with B.cinerea. Acts as positive regulator of the camalexin biosynthetic genes PAD3 (CYP71B15) and CYP71A13 by binding to their promoters (PubMed:21498677, PubMed:22392279). Acts downstream of MPK3 and MPK6 in reprogramming the expression of camalexin biosynthetic genes, which drives the metabolic flow to camalexin production (PubMed:21498677). Functions with WRKY25 as positive regulator of salt stress response and abscisic acid (ABA) signaling (PubMed:18839316). Functions with WRKY25 and WRKY26 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). The DNA-binding activity of WRKY33 is increased by SIB1 and SIB2 (PubMed:21990940). {ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:21336597, ECO:0000269|PubMed:21498677, ECO:0000269|PubMed:21990940, ECO:0000269|PubMed:22392279}. | |||||
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: By salt stress (PubMed:18839316). Induced by infection with the necrotrophic fungal pathogen B.cinerea (PubMed:17059405, PubMed:21498677, PubMed:21990940). Induced by infection with the bacterial pathogen P.syringae pv. tomato DC3000 (PubMed:17059405). {ECO:0000269|PubMed:17059405, ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:21498677, ECO:0000269|PubMed:21990940}. | |||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_019187683.1 | 0.0 | PREDICTED: probable WRKY transcription factor 26 | ||||
| Swissprot | Q8S8P5 | 1e-117 | WRK33_ARATH; Probable WRKY transcription factor 33 | ||||
| TrEMBL | D2KU32 | 0.0 | D2KU32_NICBE; Double WRKY type transfactor | ||||
| STRING | XP_009797862.1 | 0.0 | (Nicotiana sylvestris) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA2286 | 24 | 60 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G38470.1 | 1e-117 | WRKY DNA-binding protein 33 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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