PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001367.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WOX

Protein Properties

Length: 146aa MW: 16798.7 Da PI: 9.7952

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001367.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.6	1.2e-19	10	70	3	57
--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql++L +l+++ r+ps +e++ ++++l +++e++V++WFqN+R +ek+ Itr_sc001367.1_g00001.1 10 TRWNPTQEQLQILRDLYYNngMRNPSPQEIRGITQRLsqygNIEEKNVFYWFQNQRGREKQ 70 8**************97679***********************************97 PP
2	Wus_type_Homeobox	99.3	2.8e-32	9	71	3	64
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +tRW+Pt+eQ++iL++ly+ +G+r+P+ +ei+ it++L++yG+ie+kNVfyWFQN++ Re+q+ Itr_sc001367.1_g00001.1 9 STRWNPTQEQLQILRDLYYnNGMRNPSPQEIRGITQRLSQYGNIEEKNVFYWFQNQRGREKQQ 71 79*************9779**************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	3.1E-4	7	75	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.48E-13	10	74	IPR009057	Homeodomain-like
Pfam	PF00046	3.0E-17	10	70	IPR001356	Homeobox domain
CDD	cd00086	3.57E-8	10	71	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.5E-10	10	71	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.127	15	71	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MDAKYTYVST RWNPTQEQLQ ILRDLYYNNG MRNPSPQEIR GITQRLSQYG NIEEKNVFYW 60 FQNQRGREKQ QTKRPAKLAT DAATPQDLQQ QATAGGSGGR DTKHPMLETL PLFPMHSDRA 120 DKSKADMNSS HQPSLELTLR PYSPTP

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7604	23	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17950.1	7e-25	WOX family protein