PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001392.1_g00011.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 283aa    MW: 31855.5 Da    PI: 6.6453
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001392.1_g00011.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY80.32.1e-25115176159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                              +dDg++WrKYGqK++ +s++pr+Y+rCt++   +C+++k+v++ +edp +  +tY g+H+++
  Itr_sc001392.1_g00011.1 115 VDDGHAWRKYGQKVILNSKYPRNYFRCTHKfdqNCQATKQVQQIEEDPPLYRTTYLGKHTCR 176
                              59***************************9999***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-26100176IPR003657WRKY domain
PROSITE profilePS5081120.667110173IPR003657WRKY domain
SuperFamilySSF1182901.7E-25112176IPR003657WRKY domain
SMARTSM007746.4E-39115177IPR003657WRKY domain
PfamPF031068.5E-25116176IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MAEDWKRAIG ELIRGQKLTN QLRDSLKDPK VADDLLRQIL GTFNKTLWIL NKSSIDTDEV  60
SQGGAGAGDP SSPCYDGRRS EDSSGSCKAF VKDRRGCYKR RKTCETQIKE SPNLVDDGHA  120
WRKYGQKVIL NSKYPRNYFR CTHKFDQNCQ ATKQVQQIEE DPPLYRTTYL GKHTCRNFQK  180
CPQILLQPED ASVLLCFGQN SQSDMYTCLP TFSSSIKHES KEYNPHSSRI GSSTSDCFVP  240
SDDAGRVAPL SSASDYGDVI SSGGTMDMTQ FIDSDDMDDF LIY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-24115176869OsWRKY45
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019184309.11e-173PREDICTED: probable WRKY transcription factor 70
TrEMBLA0A2R6RXR52e-75A0A2R6RXR5_ACTCH; WRKY transcription factor 70
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA42302143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.15e-43WRKY DNA-binding protein 70