PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001395.1_g00008.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 239aa    MW: 26141.1 Da    PI: 8.1474
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001395.1_g00008.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.62.2e-20119153135
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                              C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  Itr_sc001395.1_g00008.1 119 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 153
                              ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577162.14E-14112154No hitNo description
SMARTSM004012.7E-20113165IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.4E-17117153IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011413.784117149IPR000679Zinc finger, GATA-type
CDDcd002026.01E-14118150No hitNo description
PfamPF003205.3E-18119153IPR000679Zinc finger, GATA-type
PROSITE patternPS003440119144IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MMQHRCSSSC GHCSCCGGAA SSAAAFSMFL SMPNSNHHSQ CYKTCAIHSE DENMYSFAAS  60
SVDCTLSLAT PSTRRFNENE KRGERSLSNF CWDILQPSKQ PPPSSVHKSA VDTIVPRRCA  120
NCDTTSTPLW RNGPRGPKSL CNACGIRFKK EERRASAAAA ATATAGGVGI EAQHMINTSW  180
VHHHHHHNQA QKMGYYSSAA YGFIDDDHRD SDAGAAIPFL SWRLSNVADR SSLVHDFTR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019173038.11e-135PREDICTED: GATA transcription factor 19-like
TrEMBLA0A1S4CIH23e-75A0A1S4CIH2_TOBAC; GATA transcription factor 19-like
STRINGXP_009603282.12e-75(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38182346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.14e-43GATA transcription factor 19