PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001419.1_g00007.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bZIP
Protein Properties Length: 485aa    MW: 52240.6 Da    PI: 6.6617
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001419.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.54e-102703131356
                              HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1  13 NReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                              NR +A rs +RK  +i+eLe+kv++L++e ++L  +l  l+ +v
  Itr_sc001419.1_g00007.1 270 NRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQAMV 313
                              *************************************9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.7E-5262325IPR004827Basic-leucine zipper domain
CDDcd147031.70E-22267311No hitNo description
SuperFamilySSF579593.86E-9267311No hitNo description
PROSITE profilePS502178.531270310IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.2E-10270312No hitNo description
PfamPF001703.8E-8270313IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MDKDKSPALG GGLLPPSGRY SHFSQPGNGF SGKPEPSGSF NLPPLGPSAS ASESGHFGIG  60
VPSESNRFSQ DISQMPDNPP KKLGHRRAHS EIITLPDDIS FDSDLGVVGG LDGPSLSDET  120
EEDLFSMYLD MDKFNSSSAT SPLQVGGSSS SVATAPGSSQ APALVTPIAE NATSAVSEKP  180
RVRHQHSQSM DGSTTIKPEM LTSGTDEPSA AESKKAISAA KLAELALIDP KRAKRGGWGF  240
LIPGRTFPFR NTDFTVGASV LTPDLQIWAN RQSAARSKER KMRYIAELER KVQTLQTEAT  300
SLSAQLTLLQ AMVGAVLGRI CFLLSNPVRD TTGLTAENSE LKLRLQTMEQ QVHLQDALND  360
ALKEEIQHLK VLTGQGMANG GPMMMNFGPS FGAGQQFYPN NHAMHTLLTA HQLQQLQLHS  420
QKPQQPPNFQ QHQLHPFQLQ PQQQPPPLQP QEQHLHQAGD PKLRSSLSAS ALTEHASDSC  480
TSMKD
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00126DAPTransfer from AT1G06070Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019168398.10.0PREDICTED: probable transcription factor PosF21
SwissprotQ040881e-135POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A328DWL00.0A0A328DWL0_9ASTE; Uncharacterized protein
TrEMBLA0A484L3080.0A0A484L308_9ASTE; Uncharacterized protein
STRINGEMJ235790.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39652137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.11e-114bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]