PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001425.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 364aa    MW: 39569 Da    PI: 6.7897
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001425.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-17257291135
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                              C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Itr_sc001425.1_g00001.1 257 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 291
                              99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.2E-8220346IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.558251287IPR000679Zinc finger, GATA-type
SMARTSM004014.7E-18251301IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.2E-15251288IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.52E-15252315No hitNo description
CDDcd002022.55E-14256303No hitNo description
PROSITE patternPS003440257282IPR000679Zinc finger, GATA-type
PfamPF003201.4E-15257291IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
METPDFFQPP THYTSQFTPD KRHPSASAAA DCKNNNAADH FVVEDLLDFP NDDTMLADDA  60
ALAAATDSSS ATACNSSSFS AATQFAPDIA ACRNHLADAP FSGEFFVPYE DVAELEWLSN  120
FVEESFSSED LQKLQLISGM KAGNEEESSQ SQTHHFQPEP NPATTFRPEM AAAVPAKARS  180
KRSRAAAPCN WTSRLLVSLS PSVDNAATTT TPAISSSSES DMTTSSSGKK AAPKKKDAAA  240
AAAVAAGMGS NGEGRKCLHC ATDKTPQWRT GPMGPKTLCN ACGVRYKSGR LVPEYRPAAS  300
PTFVLTKHSN SHRKVLEIRR QKELVQAQQH HHQFLHQKMM FDVSNGDDYL IHHQHIGPHF  360
RHLI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019197057.10.0PREDICTED: GATA transcription factor 9-like
TrEMBLA0A1U8AW421e-135A0A1U8AW42_NELNU; GATA transcription factor
STRINGXP_010267189.11e-136(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19192363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.12e-69GATA transcription factor 9