PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001441.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 340aa    MW: 36775.6 Da    PI: 6.1104
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001441.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.42.5e-13150196354
                              HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                              + h ++ErrRR+++ ++f  L +l+P +     kKl+Ka++L  A+++Ik+L
  Itr_sc001441.1_g00002.1 150 QDHVMAERRRREKLTQCFIALSSLVPGL-----KKLDKASVLGAAIKHIKDL 196
                              6799************************.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.999147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-11150196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.4E-17151209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.03E-16152213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.71E-14152201No hitNo description
SMARTSM003531.6E-15153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MDLSSAEWFG QEIDEWQMMN TTFDDFAVFS PETVPFPSST GYCSSPFPPL SSSNGFQTVA  60
GSQVVENAAG AVNRVQEASS SSSIISFANS DLPWGSQHLA NSNPKGASVK TEMVFTSGSC  120
VADGRKDMIG FGGAAAVKKG AAVRNAVQAQ DHVMAERRRR EKLTQCFIAL SSLVPGLKKL  180
DKASVLGAAI KHIKDLKERV ETLEENAKRH AEEPPAAAAV KRVRLSGSDD DSSYSSDENS  240
DASTEMSLPE IEVRSSDQNM LIRVHCKKHN GVIKEIFSEI EKMQLNILSS SVMPFGKATT  300
HITIIAQMDH KFCMAAKDVA STIRMTILKL LGCEESSSPF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155160ERRRRE
2156161RRRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019195608.11e-176PREDICTED: transcription factor bHLH18-like
SwissprotQ9T0728e-48BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A1S3X3A46e-75A0A1S3X3A4_TOBAC; transcription factor bHLH18-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45081443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.19e-45bHLH family protein