PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001441.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 335aa    MW: 37459 Da    PI: 5.9074
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001441.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.2e-10155200555
                              HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              h ++Er+RR+ + + f+ L +++P +     kK++K ++L  +++Y+++Lq
  Itr_sc001441.1_g00005.1 155 HIMAERKRRQLLSQQFQDLSTIVPGL-----KKMDKTSVLGDTIKYLRNLQ 200
                              899***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.395150199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-14153213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.49E-9155204No hitNo description
PfamPF000103.6E-8155200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-15155212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-10156205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MDVSPASCFS EQDFDDLFFN GENEIMNTIE ELAAALGEDL PNASSTSSES VDSALTGKRS  60
PSPSPNIVET QERVPKQRKL HHGVHGKPDP TADPSPSSST PFILSFGYPN NCFPQKGEEE  120
IILETLNPEI PVTVDNRKRI NGGRASKLPS NTYDHIMAER KRRQLLSQQF QDLSTIVPGL  180
KKMDKTSVLG DTIKYLRNLQ DKVKNLEEQA SKQTINSNVY VRRSQLLIED EGSSYEDSGS  240
GEQSLPEIET RVSDRHILLR IYCEKHRGVL TNIFTEVDKF NLSVTNTSVS HFGNLALDIT  300
IIAEMEKEKD WLVKDLVKGI RTSLQHATRA SKKSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158163ERKRRQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019194955.10.0PREDICTED: transcription factor bHLH25-like isoform X2
TrEMBLA0A2G9I4F17e-80A0A2G9I4F1_9LAMI; Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-45bHLH family protein