PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc001448.1_g00001.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 153aa MW: 17572.1 Da PI: 8.221

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc001448.1_g00001.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.9	3.7e-08	15	60	8	55
HHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 E+ RR++++s + +L +l+ +s K ++L +A++YIk+L+ Itr_sc001448.1_g00001.1 15 KEKYRREQMKSLYRRLASLVSAE---NSLKtSPAFDVLDQATKYIKQLE 60 69******************9...899967778**********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.794	7	59	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-10	9	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0029	13	65	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.9E-9	13	75	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.83E-5	14	63	No hit	No description
Pfam	PF00010	3.3E-5	15	60	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MQSNNSVPRP DRHLKEKYRR EQMKSLYRRL ASLVSAENSL KTSPAFDVLD QATKYIKQLE 60 NNVNDLKARK DFLQLPIEID VNESETGETL EINIVCGHEN KKLKMHKIFQ ILKEEGAEVV 120 SATNNTVDLK MYHTILCKDS FALNQTPQLN LIG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019181310.1	6e-62	PREDICTED: transcription factor bHLH36-like isoform X2

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13045	3	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10585.1	1e-16	bHLH family protein