PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc001448.1_g00002.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 162aa    MW: 18840.9 Da    PI: 10.1964
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc001448.1_g00002.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH216.1e-071460755
                             HHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
                      HLH  7 erErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                               E+ RR++++  + +L +l+      +s K     + L +A++YIk+L+
  Itr_sc001448.1_g00002.1 14 LKEKYRREKMKRLYRRLASLVSAK---NSLKtSPAFDLLDQATKYIKQLE 60
                             67*********************9...899957778************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.004759IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-10977IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-6951IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.40.50.6203.8E-452122IPR014729Rossmann-like alpha/beta/alpha sandwich fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MQSNNSVPRP SRHLKEKYRR EKMKRLYRRL ASLVSAKNSL KTSPAFDLLD QATKYIKQLE  60
NNVNELKSRK DFLQLPIEID VNESETGETL EINIVCGPEN KKLKMHKLFQ ILKEEGAEVV  120
SATNFTVDLK MYHTILCKAF TPRLGMDTIR VKERLNDFIS NK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019181310.13e-75PREDICTED: transcription factor bHLH36-like isoform X2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13045318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.11e-23bHLH family protein